FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOChi669.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOChi669.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3766
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA137836.590546999468934No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAACA85022.57036643653744No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT47112.50663834306957No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCTGGTA1022.708443972384493No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTTTCCACGTGAACCGTTGTA451.1949017525225705No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCAA441.168348380244291No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT441.168348380244291No Hit
CGGAAGGATCATTACCACTCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT360.9559214020180564No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC310.8231545406266596No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAA240.6372809346787042No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT230.6107275624004248No Hit
CGGAAGGATCATTACCACACCAAAAAAACTCTCCACGTGAATCTGTACTG200.5310674455655868No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAA180.4779607010090282No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAAACC150.3983005841741901No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCCAGCAGTGGATGTCTAGGCT140.37174721189591076No Hit
CGGAAGGATCATTAACACACCAAAAAACTATCCACGTGAACCGTTAAACA110.2920870950610728No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAA110.2920870950610728No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAAACGTTAAACA110.2920870950610728No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAACCGTATCAAA110.2920870950610728No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAG110.2920870950610728No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAA110.2920870950610728No Hit
CGGAAGGATCATTACCACACAAAAAAACTATCCACGTGAACCGTTAAACA100.2655337227827934No Hit
CGGAAGGATCATTACCACGCCAAAAAACTATCCACGTGAACCGTTAAACA100.2655337227827934No Hit
CGGAAGGATCATTACCACACCTAGAAACTTTCCACGTGAACCGTATCAAA90.2389803505045141No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTTAAACA90.2389803505045141No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAA80.21242697822623471No Hit
CGGAAGGATCATTACCACCAAAAAACTATCCACGTGAACCGTTAAACAAG70.18587360594795538No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAA70.18587360594795538No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAA70.18587360594795538No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAA70.18587360594795538No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAA70.18587360594795538No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTTAAACAA60.15932023366967604No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTAAACA60.15932023366967604No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAA60.15932023366967604No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAA60.15932023366967604No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAAGCA60.15932023366967604No Hit
CGGAAGGATCATTACCACACCAAAAAGCTATCCACGTGAACCGTTAAACA50.1327668613913967No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAA50.1327668613913967No Hit
CGGAAGGATCATTAACACACCAAAAAAACTTACCACGTGAATCTGTACTT50.1327668613913967No Hit
CGGAAGGATCATTACCACACCTAAAAACTTACCACGTGAATCTGTACTTT50.1327668613913967No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCATCAAA50.1327668613913967No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGGACCGTTAAACA50.1327668613913967No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA50.1327668613913967No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTG50.1327668613913967No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTATCAAA50.1327668613913967No Hit
CGGAAGGATCATTACCACACCAAAAAACTTACCACGTGAATCTGTACTTT50.1327668613913967No Hit
CGGAAGGATCATTACCACACCAAAAAACTACCCACGTGAACCGTTAAACA40.10621348911311736No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACATGAACCGTTAAACA40.10621348911311736No Hit
CGGAAGGATCATTACCACACCAAAAGACTATCCACGTGAACCGTTAAACA40.10621348911311736No Hit
CGGAAGGATCATTACCACACCAAAAAAATATCCACGTGAACCGTTAAACA40.10621348911311736No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAA40.10621348911311736No Hit
CGGAAGGATCATTACCACACCTAAGAACTTTCCACGTGAACCGTATCAAA40.10621348911311736No Hit
CGGAAGGATCATTACCACACCAAGAAACTATCCACGTGAACCGTTAAACA40.10621348911311736No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTAGACA40.10621348911311736No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAGTCTGTACTT40.10621348911311736No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAATCTGTACTTT40.10621348911311736No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGCTAAACA40.10621348911311736No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTATCAAA40.10621348911311736No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)