FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOATH636.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOATH636.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6868
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC513774.79615608619685No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT89513.031450203843914No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCACTTTGTA841.22306348281887No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC340.49504950495049505No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAC270.3931275480489225No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATGAAC250.36400698893418754No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCACTTTGTAT220.320326150262085No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCACTTTGTA220.320326150262085No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAACCGTATCAAC220.320326150262085No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC200.29120559114735No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC170.24752475247524752No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC140.20384391380314504No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC140.20384391380314504No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC120.17472335468841002No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC110.1601630751310425No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC100.145602795573675No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGC90.1310425160163075No Hit
CGGAAGGTCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAACA90.1310425160163075No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAC90.1310425160163075No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTGTCAAC90.1310425160163075No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC90.1310425160163075No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACAACTTTGTAT80.11648223645894001No Hit
CGGAAGGATCATACCACACCTAAAAACTTTCCACGTGAACCGTATCAACA80.11648223645894001No Hit
CGGAAGGATCATTACCACACCAAAAACTATACACGTGAACCACTTTGTAT70.10192195690157252No Hit
CGGAAGAATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC70.10192195690157252No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC70.10192195690157252No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGCATCAAC70.10192195690157252No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC70.10192195690157252No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)