FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_ITS-OOATH577.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_ITS-OOATH577.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12774
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT842865.97776733990919No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC188414.748708313762329No Hit
CGGAAGGATCATTAACACACCAAAAACTATCCACGTGAACCACTTTGTAT2652.0745263817128543No Hit
CGGAAGGATCATTACCACACAAAAAACTATCCACGTGAACCACTTTGTAT2451.917958352904337No Hit
CGGAAGGATCATTACCACACCAAAAACTATACACGTGAACCACTTTGTAT2031.5891654924064507No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACAACTTTGTAT1631.2760294347894159No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTATCAACA1250.9785501800532331No Hit
CGGAAGGATCATTACCACACATAAAAACTTTCCACGTGAACCGTATCAAC450.35227806481916396No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCACTTTGTA430.3366212619383122No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCAATTTGTAT420.3287928604978863No Hit
CGGAAGGATCATTAACACACCTAAAAACTTTCCACGTGAACCGTATCAAC390.3053076561766087No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAGCCACTTTGTAT380.29747925473618286No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAAACGTATCAAC350.2739940504149053No Hit
CGGAAGGATCATTACCACACCAAAAACTTTCCACGTGAACCGTATCAACA290.2270236417723501No Hit
CGGAAGGATCATTACCAAACCAAAAACTATCCACGTGAACCACTTTGTAT260.20353843745107247No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCACTTTGTAT190.14873962736809143No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGGACCACTTTGTAT190.14873962736809143No Hit
CGGAAGAATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT170.1330828244872397No Hit
CGGAAGGATTATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT160.12525442304681383No Hit
CGGAAGGATCATTACCACACAAAAAACTATACACGTGAACCACTTTGTAT160.12525442304681383No Hit
CGGAAGGATCATACCACACCAAAAACTATCCACGTGAACCACTTTGTATT150.11742602160638797No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGCAT150.11742602160638797No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGCGAACCACTTTGTAT150.11742602160638797No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAC150.11742602160638797No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCACTTTGTA150.11742602160638797No Hit
CGGAAGGATCATTAACACACAAAAAACTATCCACGTGAACCACTTTGTAT140.10959762016596211No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)