FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_GyrBChi98.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_GyrBChi98.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4870
Sequences flagged as poor quality0
Sequence length301
%GC65

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCTGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.16427104722792607No Hit
AGGCCGGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.1437371663244353No Hit
AGGCCGGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG60.12320328542094457No Hit
AGGCCAGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG60.12320328542094457No Hit
AGGCCGGCTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG50.10266940451745381No Hit
CGGCCCGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG50.10266940451745381No Hit
AGGCCTGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG50.10266940451745381No Hit
AGGCCCGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG50.10266940451745381No Hit
AGACCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG50.10266940451745381No Hit
AGGCCAGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG50.10266940451745381No Hit
AGACCCGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG50.10266940451745381No Hit
AGTCCTGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG50.10266940451745381No Hit
CGGCCGGGTATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG50.10266940451745381No Hit
AGGCCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG50.10266940451745381No Hit
AGACCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG50.10266940451745381No Hit
AGACCGGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG50.10266940451745381No Hit
AGGCCAGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG50.10266940451745381No Hit
AGGCCGGGTATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG50.10266940451745381No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)