FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_GyrBChi188.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_GyrBChi188.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6746
Sequences flagged as poor quality0
Sequence length301
%GC65

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG160.23717758671805514No Hit
AGTCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG140.20753038837829826No Hit
AGGCCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG140.20753038837829826No Hit
AGGCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG140.20753038837829826No Hit
AGGCCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.19270678920841983No Hit
AGGCCTGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.19270678920841983No Hit
CGGCCGGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.17788319003854136No Hit
CGGCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.1630595908686629No Hit
AGACCTGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.1630595908686629No Hit
AGTCCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.1630595908686629No Hit
AGACCGGCCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.1630595908686629No Hit
AGGCCGGGAATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.1630595908686629No Hit
AGGCCAGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.1630595908686629No Hit
AGACCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.1630595908686629No Hit
AGGCCGGGTATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.1630595908686629No Hit
AGGCCGGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.14823599169878449No Hit
AGGCCGGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.14823599169878449No Hit
AGGCCGGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.14823599169878449No Hit
AGTCCTGGAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.14823599169878449No Hit
AGGCCCGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.14823599169878449No Hit
CGGCCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.14823599169878449No Hit
AGGCCGGGTATGTATATCGGATCCACGGGTCCGCGCGGTCTCCACCACCT90.13341239252890602No Hit
AGCCCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13341239252890602No Hit
AGGCCTGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13341239252890602No Hit
AGGCCAGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13341239252890602No Hit
AGACCAGCAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13341239252890602No Hit
CGTCCTGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13341239252890602No Hit
AGTCCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13341239252890602No Hit
AGCCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13341239252890602No Hit
AGGCCGGGAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.13341239252890602No Hit
CGGCCAGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11858879335902757No Hit
CGGCCCGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11858879335902757No Hit
AGGCCGGGCATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11858879335902757No Hit
AGGCCTGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11858879335902757No Hit
AGACCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11858879335902757No Hit
CGGCCTGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11858879335902757No Hit
AGGCCTGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11858879335902757No Hit
AGTCCGGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11858879335902757No Hit
AGGCCGGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11858879335902757No Hit
AGGCCTGCTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11858879335902757No Hit
AGACCTGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11858879335902757No Hit
AGACCTGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11858879335902757No Hit
AGTCCGGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11858879335902757No Hit
AGGCCAGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11858879335902757No Hit
CGACCAGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11858879335902757No Hit
AGTCCAGGCATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11858879335902757No Hit
AGGCCAGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11858879335902757No Hit
AGGCCAGCTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11858879335902757No Hit
AGTCCAGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11858879335902757No Hit
AGACCTGGGATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11858879335902757No Hit
AGGCCTGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11858879335902757No Hit
AGGCCGGGGATGTACATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11858879335902757No Hit
AGTCCGGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11858879335902757No Hit
AGGCCGGGAATGTACATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
AGTCCTGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
AGGCCAGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
AGTCCTGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
CGGCCCGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
CGGCCAGGGATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
AGTCCGGCTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
CGGCCGGCGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
AGTCCGGGGATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
CGGCCCGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
CGGCCTGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
AGGCCTGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
AGGCCGGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
AGGCCGGGCATGTACATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
CGGCCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
AGGCCGGGCATGTATATTGGATCCACGGGTCCGCGCGGTCTCCACCACCT70.10376519418914913No Hit
AGGCCGGCGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
AGTCCAGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
CGGCCTGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
AGACCGGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
AGTCCAGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
CGACCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
AGGCCAGCAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
CGGCCTGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
AGGCCAGGCATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
AGGCCGGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
AGACCAGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
AGTCCGGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
AGGCCCGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
AGGCCGGCCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
AGCCCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
AGACCCGCGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
AGACCTGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit
AGTCCGGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.10376519418914913No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)