FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_GyrBChi187.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_GyrBChi187.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7050
Sequences flagged as poor quality0
Sequence length301
%GC65

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG160.22695035460992907No Hit
AGACCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG160.22695035460992907No Hit
AGGCCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG150.2127659574468085No Hit
AGGCCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.18439716312056736No Hit
AGGCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.18439716312056736No Hit
AGTCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.1702127659574468No Hit
CGGCCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.1702127659574468No Hit
AGGCCGGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.1702127659574468No Hit
AGGCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.1702127659574468No Hit
AGGCCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.1702127659574468No Hit
AGTCCCGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.15602836879432624No Hit
AGGCCAGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.15602836879432624No Hit
AGGCCAGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.15602836879432624No Hit
AGGCCTGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.15602836879432624No Hit
AGCCCGGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.14184397163120568No Hit
AGGCCGGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.14184397163120568No Hit
AGGCCTGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.14184397163120568No Hit
AGTCCGGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.14184397163120568No Hit
AGGCCGGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.14184397163120568No Hit
AGACCCGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.14184397163120568No Hit
AGTCCGGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.14184397163120568No Hit
AGGCCCGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.14184397163120568No Hit
AGGCCGGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.14184397163120568No Hit
AGACCGGGAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.14184397163120568No Hit
AGACCTGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.14184397163120568No Hit
AGACCAGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.14184397163120568No Hit
AGTCCGGCCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.1276595744680851No Hit
CGGCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.1276595744680851No Hit
AGGCCAGCGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.1276595744680851No Hit
AGGCCTGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.1276595744680851No Hit
CGGCCGGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.1276595744680851No Hit
AGACCAGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.1276595744680851No Hit
AGACCGGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.1276595744680851No Hit
AGACCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.1276595744680851No Hit
AGTCCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.1276595744680851No Hit
AGACCGGGTATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.1276595744680851No Hit
AGGCCTGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.1276595744680851No Hit
AGGCCAGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.1276595744680851No Hit
AGCCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.1276595744680851No Hit
AGACCGGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11347517730496454No Hit
AGGCCAGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11347517730496454No Hit
AGGCCGGCCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11347517730496454No Hit
AGTCCAGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11347517730496454No Hit
AGACCTGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11347517730496454No Hit
AGTCCTGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11347517730496454No Hit
AGCCCTGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11347517730496454No Hit
AGGCCTGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11347517730496454No Hit
AGTCCAGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11347517730496454No Hit
AGGCCAGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11347517730496454No Hit
AGTCCAGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11347517730496454No Hit
AGCCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11347517730496454No Hit
AGACCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11347517730496454No Hit
AGGCCTGGGATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11347517730496454No Hit
AGTCCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11347517730496454No Hit
AGGCCGGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11347517730496454No Hit
AGGCCGGGCATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11347517730496454No Hit
AGTCCAGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11347517730496454No Hit
AGCCCGGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11347517730496454No Hit
AGTCCGGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.11347517730496454No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)