FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_GyrBChi181.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_GyrBChi181.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2678
Sequences flagged as poor quality0
Sequence length301
%GC64

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCCGGGGATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG30.11202389843166542No Hit
AGCCCGGCGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG30.11202389843166542No Hit
AGGCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG30.11202389843166542No Hit
AGACCAGGTATGTATATAGGCGACACCTCCGACGGCACGGGCCTGCACCA30.11202389843166542No Hit
AGACCGGGTATGTACATAGGCGATACCGACGACGGGTCGGGCCTGCACCA30.11202389843166542No Hit
AGACCGGGCATGTACATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG30.11202389843166542No Hit
CGGCCAGGGATGTATATTGGCGACACCGACGACGGTTCCGGCCTCCACCA30.11202389843166542No Hit
AGACCTGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG30.11202389843166542No Hit
AGGCCTGGAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG30.11202389843166542No Hit
CGACCTGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG30.11202389843166542No Hit
AGGCCGGGTATGTATATCGGCGACACCGATGACGGCTCCGGCCTCCACCA30.11202389843166542No Hit
CGACCGGGGATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA30.11202389843166542No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)