FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_GyrBChi171.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_GyrBChi171.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7336
Sequences flagged as poor quality0
Sequence length301
%GC65

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCTGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG130.1772082878953108No Hit
AGTCCTGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.16357688113413305No Hit
AGGCCAGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG120.16357688113413305No Hit
AGGCCGGGCATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.1499454743729553No Hit
AGGCCGGCAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.1499454743729553No Hit
AGGCCTGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.13631406761177753No Hit
AGGCCTGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.13631406761177753No Hit
AGCCCGGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.13631406761177753No Hit
AGGCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.13631406761177753No Hit
AGGCCAGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.13631406761177753No Hit
AGGCCGGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12268266085059978No Hit
AGACCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12268266085059978No Hit
AGGCCGGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12268266085059978No Hit
AGGCCCGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12268266085059978No Hit
AGTCCAGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12268266085059978No Hit
AGCCCGGCGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12268266085059978No Hit
AGGCCGGGGATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12268266085059978No Hit
AGCCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12268266085059978No Hit
AGGCCCGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12268266085059978No Hit
AGACCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG90.12268266085059978No Hit
AGACCAGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.10905125408942204No Hit
AGACCGGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.10905125408942204No Hit
AGCCCGGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.10905125408942204No Hit
AGGCCCGGAATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.10905125408942204No Hit
AGCCCGGCTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.10905125408942204No Hit
AGTCCGGCTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.10905125408942204No Hit
AGTCCAGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.10905125408942204No Hit
AGACCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.10905125408942204No Hit
AGTCCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.10905125408942204No Hit
AGGCCAGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.10905125408942204No Hit
CGGCCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.10905125408942204No Hit
AGGCCGGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.10905125408942204No Hit
AGTCCTGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.10905125408942204No Hit
AGACCGGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.10905125408942204No Hit
AGGCCGGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.10905125408942204No Hit
AGTCCTGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.10905125408942204No Hit
AGGCCGGCGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.10905125408942204No Hit
AGGCCGGGCATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.10905125408942204No Hit
AGGCCAGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.10905125408942204No Hit
AGGCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.10905125408942204No Hit
AGCCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.10905125408942204No Hit
AGTCCTGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.10905125408942204No Hit
AGGCCGGGAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.10905125408942204No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)