FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_GyrBChi162.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_GyrBChi162.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2537
Sequences flagged as poor quality0
Sequence length301
%GC65

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCGGGAATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA50.1970831690973591No Hit
AGGCCAGGCATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA40.15766653527788727No Hit
AGACCGGGTATGTATATTGGCGACACCGACGACGGGTCGGGCCTGCATCA40.15766653527788727No Hit
AGACCGGGGATGTATATCGGCTCGACCGGAGAGCGTGGTCTGCACCACCT40.15766653527788727No Hit
AGACCTGGGATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA40.15766653527788727No Hit
AGGCCGGGGATGTATATTGGCTCGACCGGAGAGCGTGGTCTGCACCACCT30.11824990145841545No Hit
AGGCCGGGTATGTATATTGGCTCGACCGGAGAGCGTGGTCTGCACCACCT30.11824990145841545No Hit
AGCCCGGGTATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA30.11824990145841545No Hit
AGACCGGGGATGTATATTGGCTCGACCGGAGAGCGTGGTCTGCACCACCT30.11824990145841545No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)