FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_GyrBChi141.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_GyrBChi141.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1441
Sequences flagged as poor quality0
Sequence length301
%GC65

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCCGGGGATGTATATCGGCTCCACCGGCGAGCGCGGCCTGCACCACCT30.2081887578070784No Hit
AGGCCGGGAATGTATATCGGCTCGACCGGAGAGCGTGGTCTGCACCACCT20.13879250520471895No Hit
AGACCGGGTATGTATATCGGCGACACCGACGACGGGTCGGGCCTGCATCA20.13879250520471895No Hit
AGTCCAGGAATGTACATTGGCGACACCGACGACGGGTCGGGCCTGCATCA20.13879250520471895No Hit
AGGCCGGGGATGTACATCGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13879250520471895No Hit
AGGCCGGGGATGTATATAGGCGACACCGACGACGGGTCGGGCCTGCATCA20.13879250520471895No Hit
AGGCCTGGTATGTACATCGGATCCACGGGTCCGCGCGGTCTCCACCACCT20.13879250520471895No Hit
AGGCCGGGAATGTATATTGGCGACACCTCCGACGGCACCGGCCTGCACCA20.13879250520471895No Hit
AGGCCCGGTATGTATATCGGCGACACCGACGACGGCTCGGGCCTCCACCA20.13879250520471895No Hit
AGGCCTGCTATGTATATCGGCGATACCGACGACGGGTCGGGCCTCCACCA20.13879250520471895No Hit
AGACCGGGAATGTATATCGGCTCCACCGGTGAGCGCGGCCTGCACCACCT20.13879250520471895No Hit
AGTCCCGGAATGTATATCGGCGACACCTCCGACGGCACGGGCCTGCACCA20.13879250520471895No Hit
CGACCGGCTATGTATATTGGGTCGACCGACTCCCGCGGGCTGATGCACTG20.13879250520471895No Hit
CGGCCGGGGATGTATATCGGCGACACCGACGACGGGTCGGGCCTGCATCA20.13879250520471895No Hit
CGGCCTGGGATGTATATTGGCTCCACCGGCGAGCGCGGCCTGCACCACCT20.13879250520471895No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)