FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_GyrBChi120.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_GyrBChi120.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3543
Sequences flagged as poor quality0
Sequence length301
%GC65

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG80.22579734688117414No Hit
AGTCCTGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG60.1693480101608806No Hit
AGGCCGGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG60.1693480101608806No Hit
AGGCCAGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG60.1693480101608806No Hit
AGTCCTGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG60.1693480101608806No Hit
AGGCCGGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG50.14112334180073383No Hit
AGGCCTGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG50.14112334180073383No Hit
AGACCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG50.14112334180073383No Hit
AGTCCTGGCATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG50.14112334180073383No Hit
AGTCCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG50.14112334180073383No Hit
AGGCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG50.14112334180073383No Hit
AGGCCGGGAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG50.14112334180073383No Hit
AGGCCTGCAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11289867344058707No Hit
AGTCCTGGAATGTATATCGGATCCACGGGTCCGCGCGGTCTCCACCACCT40.11289867344058707No Hit
CGGCCTGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11289867344058707No Hit
AGGCCGGCAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11289867344058707No Hit
CGTCCGGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11289867344058707No Hit
AGGCCGGCAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11289867344058707No Hit
CGTCCGGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11289867344058707No Hit
AGGCCAGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11289867344058707No Hit
AGGCCTGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11289867344058707No Hit
AGACCAGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11289867344058707No Hit
AGTCCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11289867344058707No Hit
AGACCGGCGATGTATATCGGATCCACGGGTCCGCGCGGTCTCCACCACCT40.11289867344058707No Hit
AGACCTGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11289867344058707No Hit
CGACCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11289867344058707No Hit
CGTCCCGGAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11289867344058707No Hit
AGACCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11289867344058707No Hit
AGGCCTGGGATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11289867344058707No Hit
AGTCCCGGGATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11289867344058707No Hit
CGGCCGGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11289867344058707No Hit
AGGCCTGGTATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11289867344058707No Hit
AGACCCGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11289867344058707No Hit
AGACCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11289867344058707No Hit
AGGCCTGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11289867344058707No Hit
AGGCCTGGCATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11289867344058707No Hit
CGGCCTGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG40.11289867344058707No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)