FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_GyrBChi105.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_GyrBChi105.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5075
Sequences flagged as poor quality0
Sequence length301
%GC65

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCGGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.2167487684729064No Hit
AGGCCGGGGATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG110.2167487684729064No Hit
AGTCCGGGCATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.19704433497536944No Hit
AGGCCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG100.19704433497536944No Hit
AGACCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.13793103448275862No Hit
AGGCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG70.13793103448275862No Hit
CGGCCGGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG60.11822660098522167No Hit
AGGCCTGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG60.11822660098522167No Hit
AGGCCTGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG60.11822660098522167No Hit
AGTCCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG60.11822660098522167No Hit
CGTCCTGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG60.11822660098522167No Hit
AGGCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG60.11822660098522167No Hit
AGGCCGGGTATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG60.11822660098522167No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)