FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_GyrBATH88.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_GyrBATH88.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44
Sequences flagged as poor quality0
Sequence length301
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT49.090909090909092No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG36.8181818181818175No Hit
CGACCCGGTATGTATATCGGGTCGACCGGTGAGCGCGGCCTGCACCATCC12.272727272727273No Hit
AGACCGGCTATGTACATCGGCTCGACCGGCGTCCGCGGCCTGCACCACCT12.272727272727273No Hit
AGTCCGGGGATGTATATCGGGTCCACCGGCGAGCGCGGCCTGCACCACCT12.272727272727273No Hit
AGACCAGGTATGTACATCGGCGGCACCGACGAGCGGGCCCTGCACCACCT12.272727272727273No Hit
AGTCCGGGTATGTATATCGGGGACACGGATGACGCCTCCGGTCTGCATCA12.272727272727273No Hit
AGGCCGGGGATGTACATTGGCGACACCGACGACGGGTCCGGCCTCCACCA12.272727272727273No Hit
AGCCCAGCCATGTATATTGGCTCCACCGGCGAGCGCGGCCTGCACCACCT12.272727272727273No Hit
AGACCTGGGATGTATATAGGCGGCACCGACGAGAAGGCGATGCACCACCT12.272727272727273No Hit
AGTCCGGCTATGTACATTGGCGACACCGACGACGGCACCGGCCTGCACCA12.272727272727273No Hit
AGCCCAGCCATGTATATCGGCGGCACCGACGAGAAGGCCCTGCACCATCT12.272727272727273No Hit
AGGCCGGGGATGTATATTGGCTCGACCGGGGAGCGCGGCCTGCACCACCT12.272727272727273No Hit
CGCCCAGGAATGTACATTGGCGGCACCGACGAACGCGCCCTGCACCACCT12.272727272727273No Hit
AGACCAGGTATGTATATCGGCTCGACCGGGCCCCGAGGTCTCCACCACCT12.272727272727273No Hit
AGTCCCGGGATGTACATTGGATCCACGGGCCGCGCGGTCTGCACCACCTG12.272727272727273No Hit
AGGCCAGGTATGTATATTGGCGACACCGACGACGGCTCGGGCCTGCACCA12.272727272727273No Hit
AGGCCTGGCATGTACATAGGCTCGACGGGTGCGCGCGGGCTCCATCACCT12.272727272727273No Hit
CGACCGGGGATGTACATTGGCGACACCGACGACGGGTCCGGCCTCCACCA12.272727272727273No Hit
AGTCCGGCGATGTACATTGGCGACACCGACGACGGGTCGGGCCTCCACCA12.272727272727273No Hit
CGACCTGGGATGTATATTGGCTCGACCGGAGAGCGTGGTCTGCACCGCCT12.272727272727273No Hit
AGCCCCGGGATGTACATAGGCTCCACCGGTGCGGCAGGGTTGCATCACTT12.272727272727273No Hit
AGACCCGGTATGTACATCGGCGGCACCGACGAACGCGCCCTGCACCACCT12.272727272727273No Hit
GATTAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT12.272727272727273No Hit
AGACCCGGTATGTACATCGGGGACACCGACGACCTGTCGGGTCTCCATCA12.272727272727273No Hit
CGGCCGGCAATGTACATTGGGTCCACGGGCGAGCGCGGCCTGCACCACCT12.272727272727273No Hit
CGGCCGGGCATGTACATTGGCTCCACAGGAGAGCGTGGTCTGCATCACCT12.272727272727273No Hit
CGGCCTGGCATGTATATTGGATCCACCGGCATCTCCGGCCTCCACCACCT12.272727272727273No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG12.272727272727273No Hit
AGGCCAGGAATGTATATTGGCGACACCGACGACGGCTCGGGCCTGCACCA12.272727272727273No Hit
AGCCCCGGTATGTATATAGGCTCGACCGATTCGCGCGGACTCATGCACTG12.272727272727273No Hit
AGGCCCGGCATGTATATCGGCTCCACCGGTGAGCGCGGCCTGCACCACCT12.272727272727273No Hit
AGACCAGGAATGTATATAGGCGATACCGATGACGGCTCGGGCCTGCATCA12.272727272727273No Hit
CGTCCGGCCATGTACATCGGTGGCGTCGACGAGGTCGGCCTCCATCATCT12.272727272727273No Hit
CGGCCTGGTATGTACATCGGCGATACCGATGACGGCTCGGGCCTGCATCA12.272727272727273No Hit
AGACCTGGAATGTATATCGGGTCGACCGGCGCTCCCGGTCTGCATCATGT12.272727272727273No Hit
GATGAGTCAGCGTCACTATGTTGCGGTTACTCACTGTCTCTTATACACAT12.272727272727273No Hit
CGACCGGGGATGTATATTGGTGGCACCGACGCCAACGCGCTGCACCATCT12.272727272727273No Hit
AGTCCCGCTATGTACATCGGCGGCACCGACGAACGCGCCCTGCATCACCT12.272727272727273No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)