FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_GyrBATH75.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_GyrBATH75.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1052
Sequences flagged as poor quality0
Sequence length301
%GC64

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT80.7604562737642585No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG40.38022813688212925No Hit
AGGCCAGGTATGTATATCGGCGACACCGACGACGGCTCGGGCCTGCACCA20.19011406844106463No Hit
CGGCCCGGTATGTATATCGGCAACACCGACGACGGCTCGGGCCTGCACCA20.19011406844106463No Hit
AGGCCGGGAATGTACATCGGCAACACCGACGACGGCTCGGGCCTGCACCA20.19011406844106463No Hit
AGACCAGGGATGTACATCGGCTCGACCGATTCGCGCGGCCTCATGCACTG20.19011406844106463No Hit
GATTAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT20.19011406844106463No Hit
CGACCGGGTATGTATATTGGCGATACAGACGACGGTAGCGGTCTGCATCA20.19011406844106463No Hit
AGGCCGGGTATGTACATCGGATCCACGGGGCCGCGCGGTCTGCACCACCT20.19011406844106463No Hit
AGACCAGGCATGTATATCGGCGATACAGACGACGGTAGCGGTCTGCATCA20.19011406844106463No Hit
AGGCCGGCGATGTATATCGGCTCGACCGATTCGCGCGGCCTCATGCACTG20.19011406844106463No Hit
AGTCCGGGGATGTATATCGGCGATACAGACGACGGTAGCGGTCTGCATCA20.19011406844106463No Hit
CGGCCCGGGATGTATATCGGCAACACCGACGACGGCTCGGGCCTGCACCA20.19011406844106463No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)