FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_GyrBATH71.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_GyrBATH71.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1316
Sequences flagged as poor quality0
Sequence length301
%GC65

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT100.7598784194528876No Hit
AGACCTGGTATGTATATCGGGTCCACCGGTGAGCGCGGGCTGCACCACCT20.1519756838905775No Hit
CGTCCTGCGATGTATATCGGCGACACCGACGACGGGTCGGGCCTGCATCA20.1519756838905775No Hit
CGACCGGGTATGTATATTGGGTCCACGGGTGAGCGCGGCCTGCACCACCT20.1519756838905775No Hit
AGACCTGCTATGTATATTGGCGGCACCGACGCCAATGCGCTGCACCATCT20.1519756838905775No Hit
CGTCCAGGCATGTATATAGGCTCGACCGGCGAGCGCGGCCTGCACCACAT20.1519756838905775No Hit
AGGCCTGGGATGTATATCGGCGACACCGACGACGGGTCGGGCCTGCATCA20.1519756838905775No Hit
AGTCCGGGGATGTATATCGGGTCAACGGGTCCCCGCGGTCTTCACCACCT20.1519756838905775No Hit
AGGCCAGGTATGTATATCGGCGACACCGACGACGGATCGGGGCTCCACCA20.1519756838905775No Hit
AGGCCGGGGATGTATATTGGCTCGACCGGTCCGCGGGGGCTCCATCACCT20.1519756838905775No Hit
CGGCCGGCAATGTATATAGGGTCCACCGGTGAGCGCGGGCTGCACCACCT20.1519756838905775No Hit
AGGCCGGCGATGTACATTGGGTCCACCGGTGAGCGCGGGCTGCACCACCT20.1519756838905775No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)