FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_GyrBATH65.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_GyrBATH65.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1576
Sequences flagged as poor quality0
Sequence length301
%GC64

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT80.5076142131979695No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG60.3807106598984772No Hit
AGGCCGGGGATGTATATCGGGGACACGACCTCGCGCGGGTATCACCACTT30.1903553299492386No Hit
CGGCCCGGTATGTATATTGGGGACACGACCTCGCGCGGGTATCACCACTT20.12690355329949238No Hit
AGGCCTGCAATGTACATTGGGGACACGACCTCGCGCGGGTATCACCACTT20.12690355329949238No Hit
AGACCGGGCATGTACATCGGCTCGACCGATTCGCGCGGCCTCATGCACTG20.12690355329949238No Hit
AGTCCAGCTATGTATATCGGCTCGACCGGTGAGCGCGGCCTGCACCACCT20.12690355329949238No Hit
AGTCCAGGTATGTACATCGGCTCGACCGATTCGCGCGGCCTCATGCACTG20.12690355329949238No Hit
AGGCCAGGTATGTACATCGGATCCACGGGGCCGCGCGGTCTGCACCACCT20.12690355329949238No Hit
CGACCTGGTATGTACATTGGGGACACGACCTCGCGCGGGTATCACCACTT20.12690355329949238No Hit
CGGCCAGCTATGTATATCGGCTCGACCGGCGAGCGCGGCCTGCACCACAT20.12690355329949238No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)