FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_GyrBATH49.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_GyrBATH49.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1824
Sequences flagged as poor quality0
Sequence length301
%GC63

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT50.2741228070175438No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG40.21929824561403508No Hit
AGGCCGGGGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG30.1644736842105263No Hit
AGGCCAGCAATGTACATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG30.1644736842105263No Hit
AGGCCAGGCATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG30.1644736842105263No Hit
CGGCCAGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG30.1644736842105263No Hit
CGGCCTGGGATGTACATCGGCTCGACCGGCGAGCGCGGCCTGCACCACAT30.1644736842105263No Hit
AGGCCGGGAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG30.1644736842105263No Hit
CGGCCTGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG30.1644736842105263No Hit
CGTCCGGCGATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
AGACCTGGGATGTATATTGGCGGCACCGACGAAAAGGCTCTGCATCACCT20.10964912280701754No Hit
AGTCCTGGCATGTATATCGGATCCACGGGTCCGCGCGGTCTCCACCACCT20.10964912280701754No Hit
AGCCCCGGTATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
AGCCCAGGAATGTACATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
CGGCCAGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
AGACCAGGCATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
CGACCTGGGATGTACATCGGATCCACGGGTCCGCGCGGTCTCCACCACCT20.10964912280701754No Hit
AGTCCGGGAATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
AGTCCTGCAATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
AGGCCGGGTATGTACATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
AGACCAGCTATGTACATCGGCTCGACCGGCGAGCGCGGCCTGCACCACAT20.10964912280701754No Hit
CGGCCGGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
CGGCCGGGCATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
CGTCCGGGAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
AGGCCCGGGATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
AGGCCAGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
AGGCCTGGAATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
AGGCCCGGGATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
AGACCTGCTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
AGACCTGGGATGTACATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
AGGCCGGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
AGGCCGGGTATGTATATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
CGTCCTGGAATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
CGACCAGGGATGTATATCGGCTCGACTGGAGAGCGTGGTCTGCACCACCT20.10964912280701754No Hit
AGGCCGGGGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
CGACCGGGTATGTACATAGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
AGTCCGGGGATGTATATTGGCTCCACGGGCGAGCGGGGCCTGCACCACCT20.10964912280701754No Hit
CGACCGGGCATGTACATAGGATCCACGGGTCCGCGCGGTCTCCACCACCT20.10964912280701754No Hit
CGTCCCGGAATGTACATTGGCTCCACCGGCGAGCGCGGCCTGCACCACCT20.10964912280701754No Hit
AGTCCTGGTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
AGGCCTGGTATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
AGGCCCGGGATGTACATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
AGACCAGGCATGTACATCGGCGACACAACTTCACGCGGATATCATCACCT20.10964912280701754No Hit
AGCCCTGCGATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
AGGCCGGGTATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
CGGCCGGGCATGTATATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit
AGGCCAGCTATGTATATCGGGTCGAACGGATCGCCCGGGCTCATGCACTG20.10964912280701754No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)