FastQCFastQC Report
Tue 16 Jan 2024
000000000-LC922_l01_n01_GyrBATH25.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LC922_l01_n01_GyrBATH25.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1546
Sequences flagged as poor quality0
Sequence length301
%GC64

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG30.19404915912031048No Hit
AGACCAGCCATGTATATCGGCGACACCGACGACGGCTCGGGCCTGCACCA20.129366106080207No Hit
CGGCCGGGCATGTATATTGGCGACACCGACGACGGCTCGGGCCTGCACCA20.129366106080207No Hit
AGGCCTGCTATGTATATTGGCGACACCGACGACGGGTCGGGCCTGCATCA20.129366106080207No Hit
AGGCCGGGTATGTATATCGGCGATACCGACGACGGATCGGGCCTCCACCA20.129366106080207No Hit
AGGCCTGCAATGTACATTGGCGGCACCGACGAACGGGCGCTGCATCACCT20.129366106080207No Hit
AGGCCGGGGATGTACATCGGCGGCACGGACGAAAAGGCGCTGCATCATCT20.129366106080207No Hit
AGTCCGGGAATGTATATAGGCTCGACCGACTCGCGCGGCCTGATGCACTG20.129366106080207No Hit
AGACCTGCGATGTATATCGGCGGCACGGACGAAAAGGCGCTGCATCATCT20.129366106080207No Hit
AGTCCGGGTATGTATATAGGCGACACCGACGACGGCTCGGGTCTGCACCA20.129366106080207No Hit
AGGCCAGGGATGTATATCGGCGACACCGACGACGGCTCGGGCCTCCACCA20.129366106080207No Hit
AGACCAGGCATGTATATCGGCGGGACGGACGAGCGCGCGCTGCATCACCT20.129366106080207No Hit
AGGCCCGGGATGTATATCGGCGGCACCGACGAACGGGCGCTGCATCACCT20.129366106080207No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)