[2024-05-03 02:26:29,266] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2024-05-03 02:26:29,266] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2024-05-03 02:26:29,266] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-05-03 02:26:29,269] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2024-05-03 02:26:29,269] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2024-05-03 02:26:29,269] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-05-03 02:26:29,305] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2024-05-03 02:26:29,305] multiqc [INFO ] This is MultiQC v1.9 [2024-05-03 02:26:29,305] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-05-03 02:26:29,305] multiqc [DEBUG ] Working dir : /vast/gencore/GENEFLOW/work/43/a0d30d6f0971e842d6e4bbe75a90f0/1 [2024-05-03 02:26:29,305] multiqc [INFO ] Template : default [2024-05-03 02:26:29,305] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2024-05-03 02:26:29,305] multiqc [INFO ] Searching : /vast/gencore/GENEFLOW/work/43/a0d30d6f0971e842d6e4bbe75a90f0/1 [2024-05-03 02:26:29,306] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2024-05-03 02:26:29,306] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-46011624/tmplv2mft53 [2024-05-03 02:26:29,543] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n01_repeat-GyrBATH10_fastqc.html [2024-05-03 02:26:29,550] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n01_repeat-GyrBATH10_fastqc.html [2024-05-03 02:26:29,650] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern 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[2024-05-03 02:27:25,707] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n01_repeat-ITS-OODve852_fastqc.html [2024-05-03 02:27:25,707] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n01_repeat-ITS-OODve852_fastqc.html [2024-05-03 02:27:25,707] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n01_repeat-ITS-OODve852_fastqc.html [2024-05-03 02:27:25,707] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n01_repeat-ITS-OODve852_fastqc.html [2024-05-03 02:27:25,707] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n01_repeat-ITS-OODve852_fastqc.html [2024-05-03 02:27:25,811] multiqc [DEBUG ] File ignored by hicexplorer 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[2024-05-03 02:28:50,456] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITS-OODve808_fastqc.html [2024-05-03 02:28:50,456] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITS-OODve808_fastqc.html [2024-05-03 02:28:50,456] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITS-OODve808_fastqc.html [2024-05-03 02:28:50,456] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITS-OODve808_fastqc.html [2024-05-03 02:28:50,456] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITS-OODve808_fastqc.html [2024-05-03 02:28:50,550] multiqc [DEBUG ] File ignored by hicexplorer 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[2024-05-03 02:28:55,515] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITS-OODve896_fastqc.html [2024-05-03 02:28:55,523] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITS-OODve896_fastqc.html [2024-05-03 02:28:55,523] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITS-OODve896_fastqc.html [2024-05-03 02:28:55,523] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITS-OODve896_fastqc.html [2024-05-03 02:28:55,523] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITS-OODve896_fastqc.html [2024-05-03 02:28:55,523] multiqc [DEBUG ] File ignored by rseqc/read_distribution 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[2024-05-03 02:28:55,717] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITS-OODve898_fastqc.html [2024-05-03 02:28:55,717] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITS-OODve898_fastqc.html [2024-05-03 02:28:55,717] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITS-OODve898_fastqc.html [2024-05-03 02:28:55,717] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITS-OODve898_fastqc.html [2024-05-03 02:28:55,717] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITS-OODve898_fastqc.html [2024-05-03 02:28:55,809] multiqc [DEBUG ] File ignored by hicexplorer 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File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve559_fastqc.html [2024-05-03 02:29:24,685] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve559_fastqc.html [2024-05-03 02:29:24,776] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve560_fastqc.html [2024-05-03 02:29:24,782] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve560_fastqc.html [2024-05-03 02:29:24,872] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve561_fastqc.html [2024-05-03 02:29:24,879] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve564_fastqc.html [2024-05-03 02:29:25,267] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve565_fastqc.html [2024-05-03 02:29:25,274] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve565_fastqc.html [2024-05-03 02:29:25,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve566_fastqc.html [2024-05-03 02:29:25,373] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve566_fastqc.html [2024-05-03 02:29:25,465] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve570_fastqc.html [2024-05-03 02:29:25,772] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve570_fastqc.html [2024-05-03 02:29:25,861] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve875_fastqc.html [2024-05-03 02:29:25,867] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve875_fastqc.html [2024-05-03 02:29:25,956] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve876_fastqc.html [2024-05-03 02:29:25,962] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve876_fastqc.html [2024-05-03 02:29:26,051] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve877_fastqc.html [2024-05-03 02:29:26,057] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve877_fastqc.html [2024-05-03 02:29:26,152] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve878_fastqc.html [2024-05-03 02:29:26,158] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve878_fastqc.html [2024-05-03 02:29:26,158] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve878_fastqc.html [2024-05-03 02:29:26,158] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve878_fastqc.html [2024-05-03 02:29:26,158] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve878_fastqc.html [2024-05-03 02:29:26,158] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve878_fastqc.html [2024-05-03 02:29:26,158] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve878_fastqc.html [2024-05-03 02:29:26,252] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve879_fastqc.html [2024-05-03 02:29:26,258] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve879_fastqc.html [2024-05-03 02:29:26,258] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve879_fastqc.html [2024-05-03 02:29:26,258] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve879_fastqc.html [2024-05-03 02:29:26,258] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve879_fastqc.html [2024-05-03 02:29:26,258] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve879_fastqc.html [2024-05-03 02:29:26,258] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve879_fastqc.html [2024-05-03 02:29:26,345] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve880_fastqc.html [2024-05-03 02:29:26,352] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve880_fastqc.html [2024-05-03 02:29:26,445] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve881_fastqc.html [2024-05-03 02:29:26,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve881_fastqc.html [2024-05-03 02:29:26,543] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve882_fastqc.html [2024-05-03 02:29:26,549] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve882_fastqc.html [2024-05-03 02:29:26,640] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve883_fastqc.html [2024-05-03 02:29:26,647] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve883_fastqc.html [2024-05-03 02:29:26,732] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve884_fastqc.html [2024-05-03 02:29:26,738] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve884_fastqc.html [2024-05-03 02:29:26,827] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve885_fastqc.html [2024-05-03 02:29:26,833] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve885_fastqc.html [2024-05-03 02:29:26,833] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve885_fastqc.html [2024-05-03 02:29:26,833] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve885_fastqc.html [2024-05-03 02:29:26,833] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve885_fastqc.html [2024-05-03 02:29:26,833] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve885_fastqc.html [2024-05-03 02:29:26,834] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve885_fastqc.html [2024-05-03 02:29:26,925] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve886_fastqc.html [2024-05-03 02:29:26,931] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve886_fastqc.html [2024-05-03 02:29:26,931] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve886_fastqc.html [2024-05-03 02:29:26,931] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve886_fastqc.html [2024-05-03 02:29:26,931] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve886_fastqc.html [2024-05-03 02:29:26,931] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve886_fastqc.html [2024-05-03 02:29:26,931] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve886_fastqc.html [2024-05-03 02:29:27,019] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve887_fastqc.html [2024-05-03 02:29:27,025] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve887_fastqc.html [2024-05-03 02:29:27,025] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve887_fastqc.html [2024-05-03 02:29:27,025] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve887_fastqc.html [2024-05-03 02:29:27,025] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve887_fastqc.html [2024-05-03 02:29:27,025] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve887_fastqc.html [2024-05-03 02:29:27,025] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve887_fastqc.html [2024-05-03 02:29:27,115] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve888_fastqc.html [2024-05-03 02:29:27,121] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve888_fastqc.html [2024-05-03 02:29:27,215] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve889_fastqc.html [2024-05-03 02:29:27,221] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve889_fastqc.html [2024-05-03 02:29:27,310] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve890_fastqc.html [2024-05-03 02:29:27,316] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve890_fastqc.html [2024-05-03 02:29:27,409] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve913_fastqc.html [2024-05-03 02:29:27,415] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve913_fastqc.html [2024-05-03 02:29:27,505] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve914_fastqc.html [2024-05-03 02:29:27,512] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve914_fastqc.html [2024-05-03 02:29:27,604] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve915_fastqc.html [2024-05-03 02:29:27,610] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve915_fastqc.html [2024-05-03 02:29:27,701] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve916_fastqc.html [2024-05-03 02:29:27,708] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_repeat-ITSDve916_fastqc.html [2024-05-03 02:29:27,798] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_undetermined_fastqc.html [2024-05-03 02:29:27,806] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-L7NBT_l01_n02_undetermined_fastqc.html [2024-05-03 02:29:28,434] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2024-05-03 02:29:28,435] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2024-05-03 02:29:28,455] multiqc.plots.table [DEBUG ] Plotting beeswarm instead of table, 903 samples [2024-05-03 02:29:28,459] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 903 samples (table) [2024-05-03 02:29:28,461] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2024-05-03 02:29:28,471] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2024-05-03 02:29:28,478] multiqc [DEBUG ] No samples found: conpair [2024-05-03 02:29:28,484] multiqc [DEBUG ] No samples found: peddy [2024-05-03 02:29:28,490] multiqc [DEBUG ] No samples found: somalier [2024-05-03 02:29:28,497] multiqc [DEBUG ] No samples found: methylQA [2024-05-03 02:29:28,507] multiqc [DEBUG ] No samples found: mosdepth [2024-05-03 02:29:28,514] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-05-03 02:29:28,517] multiqc [DEBUG ] No samples found: qualimap [2024-05-03 02:29:28,524] multiqc [DEBUG ] No samples found: preseq [2024-05-03 02:29:28,531] multiqc [DEBUG ] No samples found: quast [2024-05-03 02:29:28,539] multiqc [DEBUG ] No samples found: qorts [2024-05-03 02:29:28,545] multiqc [DEBUG ] No samples found: rna_seqc [2024-05-03 02:29:28,550] multiqc [DEBUG ] No samples found: rockhopper [2024-05-03 02:29:28,555] multiqc [DEBUG ] No samples found: rsem [2024-05-03 02:29:28,571] multiqc [DEBUG ] No samples found: rseqc [2024-05-03 02:29:28,576] multiqc [DEBUG ] No samples found: busco [2024-05-03 02:29:28,582] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-05-03 02:29:28,589] multiqc [DEBUG ] No samples found: disambiguate [2024-05-03 02:29:28,595] multiqc [DEBUG ] No samples found: supernova [2024-05-03 02:29:28,614] multiqc [DEBUG ] No samples found: deeptools [2024-05-03 02:29:28,622] multiqc [DEBUG ] No samples found: sargasso [2024-05-03 02:29:28,628] multiqc [DEBUG ] No samples found: verifybamid [2024-05-03 02:29:28,633] multiqc [DEBUG ] No samples found: mirtrace [2024-05-03 02:29:28,640] multiqc [DEBUG ] No samples found: happy [2024-05-03 02:29:28,646] multiqc [DEBUG ] No samples found: mirtop [2024-05-03 02:29:28,653] multiqc [DEBUG ] No samples found: homer [2024-05-03 02:29:28,658] multiqc [DEBUG ] No samples found: macs2 [2024-05-03 02:29:28,663] multiqc [DEBUG ] No samples found: theta2 [2024-05-03 02:29:28,669] multiqc [DEBUG ] No samples found: snpeff [2024-05-03 02:29:28,680] multiqc [DEBUG ] No samples found: gatk [2024-05-03 02:29:28,685] multiqc [DEBUG ] No samples found: htseq [2024-05-03 02:29:28,692] multiqc [DEBUG ] No samples found: bcftools [2024-05-03 02:29:28,698] multiqc [DEBUG ] No samples found: featureCounts [2024-05-03 02:29:28,706] multiqc [DEBUG ] No samples found: fgbio [2024-05-03 02:29:28,724] multiqc [DEBUG ] No samples found: dragen [2024-05-03 02:29:28,730] multiqc [DEBUG ] No samples found: dedup [2024-05-03 02:29:28,737] multiqc [DEBUG ] No samples found: damageprofiler [2024-05-03 02:29:28,777] multiqc [DEBUG ] No samples found: biobambam2 [2024-05-03 02:29:28,782] multiqc [DEBUG ] No samples found: mtnucratio [2024-05-03 02:29:28,784] multiqc [DEBUG ] No samples found: picard [2024-05-03 02:29:28,791] multiqc [DEBUG ] No samples found: prokka [2024-05-03 02:29:28,795] multiqc [DEBUG ] No samples found: samblaster [2024-05-03 02:29:28,806] multiqc [DEBUG ] No samples found: samtools [2024-05-03 02:29:28,812] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-05-03 02:29:28,818] multiqc [DEBUG ] No samples found: bamtools [2024-05-03 02:29:28,825] multiqc [DEBUG ] No samples found: jellyfish [2024-05-03 02:29:28,836] multiqc [DEBUG ] No samples found: vcftools [2024-05-03 02:29:28,842] multiqc [DEBUG ] No samples found: longranger [2024-05-03 02:29:28,847] multiqc [DEBUG ] No samples found: stacks [2024-05-03 02:29:28,853] multiqc [DEBUG ] No samples found: varscan2 [2024-05-03 02:29:28,873] multiqc [DEBUG ] No samples found: bbmap [2024-05-03 02:29:28,880] multiqc [DEBUG ] No samples found: bismark [2024-05-03 02:29:28,887] multiqc [DEBUG ] No samples found: biscuit [2024-05-03 02:29:28,893] multiqc [DEBUG ] No samples found: hicexplorer [2024-05-03 02:29:28,899] multiqc [DEBUG ] No samples found: hicup [2024-05-03 02:29:28,906] multiqc [DEBUG ] No samples found: hicpro [2024-05-03 02:29:28,911] multiqc [DEBUG ] No samples found: salmon [2024-05-03 02:29:28,916] multiqc [DEBUG ] No samples found: kallisto [2024-05-03 02:29:28,922] multiqc [DEBUG ] No samples found: slamdunk [2024-05-03 02:29:28,928] multiqc [DEBUG ] No samples found: star [2024-05-03 02:29:28,933] multiqc [DEBUG ] No samples found: hisat2 [2024-05-03 02:29:28,938] multiqc [DEBUG ] No samples found: tophat [2024-05-03 02:29:28,944] multiqc [DEBUG ] No samples found: bowtie2 [2024-05-03 02:29:28,950] multiqc [DEBUG ] No samples found: bowtie1 [2024-05-03 02:29:28,954] multiqc [DEBUG ] No samples found: snpsplit [2024-05-03 02:29:28,963] multiqc [DEBUG ] No samples found: kat [2024-05-03 02:29:28,969] multiqc [DEBUG ] No samples found: leehom [2024-05-03 02:29:28,977] multiqc [DEBUG ] No samples found: adapterRemoval [2024-05-03 02:29:28,983] multiqc [DEBUG ] No samples found: clipandmerge [2024-05-03 02:29:28,987] multiqc [DEBUG ] No samples found: cutadapt [2024-05-03 02:29:28,993] multiqc [DEBUG ] No samples found: flexbar [2024-05-03 02:29:28,999] multiqc [DEBUG ] No samples found: kaiju [2024-05-03 02:29:29,005] multiqc [DEBUG ] No samples found: kraken [2024-05-03 02:29:29,011] multiqc [DEBUG ] No samples found: malt [2024-05-03 02:29:29,017] multiqc [DEBUG ] No samples found: trimmomatic [2024-05-03 02:29:29,023] multiqc [DEBUG ] No samples found: sickle [2024-05-03 02:29:29,028] multiqc [DEBUG ] No samples found: skewer [2024-05-03 02:29:29,033] multiqc [DEBUG ] No samples found: sortmerna [2024-05-03 02:29:29,039] multiqc [DEBUG ] No samples found: biobloomtools [2024-05-03 02:29:29,045] multiqc [DEBUG ] No samples found: fastq_screen [2024-05-03 02:29:29,050] multiqc [DEBUG ] No samples found: afterqc [2024-05-03 02:29:29,054] multiqc [DEBUG ] No samples found: fastp [2024-05-03 02:29:53,858] multiqc.modules.fastqc.fastqc [INFO ] Found 1806 reports [2024-05-03 02:32:03,650] multiqc [DEBUG ] No samples found: pycoqc [2024-05-03 02:32:03,656] multiqc [DEBUG ] No samples found: minionqc [2024-05-03 02:32:03,662] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-05-03 02:32:03,669] multiqc [DEBUG ] No samples found: clusterflow [2024-05-03 02:32:03,675] multiqc [DEBUG ] No samples found: bcl2fastq [2024-05-03 02:32:03,681] multiqc [DEBUG ] No samples found: interop [2024-05-03 02:32:03,691] multiqc [DEBUG ] No samples found: ivar [2024-05-03 02:32:03,695] multiqc [DEBUG ] No samples found: flash [2024-05-03 02:32:03,703] multiqc [DEBUG ] No samples found: seqyclean [2024-05-03 02:32:03,703] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2024-05-03 02:32:03,703] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2024-05-03 02:32:03,703] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2024-05-03 02:32:03,703] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2024-05-03 02:32:03,703] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2024-05-03 02:32:03,704] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2024-05-03 02:32:03,716] multiqc.plots.table [DEBUG ] Plotting beeswarm instead of table, 1806 samples [2024-05-03 02:32:03,723] multiqc [INFO ] Compressing plot data [2024-05-03 02:32:04,828] multiqc [INFO ] Report : multiqc_report.html [2024-05-03 02:32:04,828] multiqc [INFO ] Data : multiqc_data [2024-05-03 02:32:04,828] multiqc [DEBUG ] Moving data file from '/state/partition1/job-46011624/tmplv2mft53/multiqc_data' to '/vast/gencore/GENEFLOW/work/43/a0d30d6f0971e842d6e4bbe75a90f0/1/multiqc_data' [2024-05-03 02:32:05,325] multiqc [INFO ] MultiQC complete