FastQCFastQC Report
Fri 3 May 2024
000000000-L7NBT_l01_n02_repeat-ITS-OOChi690.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-L7NBT_l01_n02_repeat-ITS-OOChi690.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38
Sequences flagged as poor quality0
Sequence length301
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT37.894736842105263No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC25.263157894736842No Hit
ATCGGACACGTTCAACCAGCTGTTCACGCTGCACGGCTCGATGATGATGT25.263157894736842No Hit
ACCCCGTGGAGGCCGCCTGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC25.263157894736842No Hit
ACGCCGTGGAATCCGCCGGAGACCTCGTACGCGTTCTCGTCGTTGGTGTT12.631578947368421No Hit
ACTCCGTGTAAACCGCCGGAGTGCTTGTAGCTCTGGCCGTCGAACTTGCC12.631578947368421No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC12.631578947368421No Hit
ACGCCGTGGAAACCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC12.631578947368421No Hit
ACACCGTGGAGGCCGCCCGACACCTTGTAGGCGTTCGAATCATTGGTGTT12.631578947368421No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT12.631578947368421No Hit
ACGCCATGGAGGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC12.631578947368421No Hit
ACTTCGTGTCGCCCACCGGATGCCGCTTTCGAACCGCCGCCGACCCTGCC12.631578947368421No Hit
ATCGGACACGTTCAACCAGCTGTTCACGCTGCACGGCGCGATGATGATGT12.631578947368421No Hit
AACCTATACATACACTGGAGAAAGATAGTGGAAGAAAGCAAGAAAAATAT12.631578947368421No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAGCGCAAAAACTTT12.631578947368421No Hit
CTCGTACTCTTTCCACCATAGGCTCCATTATATCTGCCGTTCTTTTTAAC12.631578947368421No Hit
ATCGGACACGTTCGACGCTGACTCATCCTGTCTCTTATACACATCTGACG12.631578947368421No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCGTTGTTGAAAGT12.631578947368421No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTATCTAGTTAAAAGCAAGAACT12.631578947368421No Hit
AGACTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAAATTT12.631578947368421No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTATAAAAACAGAGAC12.631578947368421No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAGGCAGAGACT12.631578947368421No Hit
AGCCTAGACATCCACTGCTGAAAGTCGTTATCTAGAATAAAAGCAGAGAC12.631578947368421No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAAAAAACACAGACAC12.631578947368421No Hit
CGGCTGCGTTCTTCATCGATGCCAGAACCAAGAGATCCATTGTTGAAAGT12.631578947368421No Hit
ACTCCATGTAGGCCGCCGGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC12.631578947368421No Hit
ACGCCGTGTAAGCCACCTGAGACCTTGTATGAGTTCTGGTCGAACTTGCC12.631578947368421No Hit
ACGCCGTGTAAGCCGCCCGAGACCTTGTACGCGTTCTCGTCCGAAGTGTT12.631578947368421No Hit
ACCCCGTGCAAACCTCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC12.631578947368421No Hit
ATCGGACACGTTCAACCATAGGCTCCATGATATCTGAAGAGCTAGTAAAC12.631578947368421No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATGGATTAAAACTGTAGACTT12.631578947368421No Hit
ACGCCATGTAGGCCACCTGAGACCTTGTAGGCATTGCCGTCGTTGCTGTT12.631578947368421No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT12.631578947368421No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)