FastQCFastQC Report
Fri 3 May 2024
000000000-L7NBT_l01_n01_repeat-ITS-OOChi752.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-L7NBT_l01_n01_repeat-ITS-OOChi752.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2648
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC90534.176737160120844No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTATCAAC50819.184290030211482No Hit
CGGAAGGATCATTACCACACCAAAAACTTTCCACGTGAACTGTCTTAGCA38314.463746223564955No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCGTTAT2579.705438066465257No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCTTAGC281.0574018126888218No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCAACGTGAACCGTATCAAC170.6419939577039275No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTCGTTAT90.33987915407854985No Hit
CGGAAGGATCATTACCACACCAAAAAACTATCCACGTGAACCGTTACATA90.33987915407854985No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCCTATCAAC90.33987915407854985No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCAA80.3021148036253776No Hit
CGGAAGGATCATTACCACACTAAAAACTTTCCACGTGAACTGTCTTAGCA70.26435045317220546No Hit
CGGAAGGATCATTACCACACCAAAAACTTTCCACGTGAACCGTATCAACA70.26435045317220546No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCAACGTGAACCGTATCAAC70.26435045317220546No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC70.26435045317220546No Hit
CGGAAGGATCATTACCACACCAAAAACTTTCCACGTGAACTCTCTTAGCA70.26435045317220546No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC60.22658610271903326No Hit
CGGAAGGATCATTACCACACCAAAAACTTTCCACGTGAACCGTATCAACC60.22658610271903326No Hit
CGGAAGGATCATTACCACACCTAAAAAATTTCCACGTGAACCGTATCAAC60.22658610271903326No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTAAACCGTATCAAC60.22658610271903326No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA60.22658610271903326No Hit
CGGAAGGATCATTACCACACCTAAAAACTATACACGTGAACCGTATCAAC60.22658610271903326No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG60.22658610271903326No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC60.22658610271903326No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC50.18882175226586104No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAGCCGTATCAAC50.18882175226586104No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAC50.18882175226586104No Hit
CGGAAGGATCATTACCACACCAAAAACTTCCCACGTGAACTGTCTTAGCA50.18882175226586104No Hit
CGGAAGGATCATTACCACACCAAAAACTTTCCACGTGAACTGTCCTAGCA50.18882175226586104No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACTGTCTTAGCA50.18882175226586104No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC50.18882175226586104No Hit
CGGAAGGATCATTACCACGCCTAAAAACTATCCACGTGAACCGTATCAAC40.1510574018126888No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTAGTTAT40.1510574018126888No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTAAC40.1510574018126888No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC40.1510574018126888No Hit
CGGAAGGATCATTACCACCTAAAAACTATCCACGTGAACCGTATCAACCC40.1510574018126888No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTACACGTGAACCGTATCAAC40.1510574018126888No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA40.1510574018126888No Hit
CGGAAGGATCATTACCACACCAAAAACTTTCCACGTGAACTGTCGTTATT40.1510574018126888No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACTGTCTTAGC40.1510574018126888No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTATCAAC40.1510574018126888No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAACC30.11329305135951663No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTATCAGC30.11329305135951663No Hit
CGGAAGGATCATTACCAGCAGTGGATGTCTAGGCTCTGTCTCTTATACAC30.11329305135951663No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTATCGAC30.11329305135951663No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC30.11329305135951663No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACTGTCGTTAT30.11329305135951663No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCAACGTGAACTGTCGTTAT30.11329305135951663No Hit
CGGAAGGATCATTACCACACCTGAAAACTATCCACGTGAACCGTATCAAC30.11329305135951663No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAC30.11329305135951663No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTGTCAAC30.11329305135951663No Hit
CGGAAGGATCATTACCACACCTAAAAACTACCCACGTGAACCGTATCAAC30.11329305135951663No Hit
CGGAAGGATCATTACCACACCAAAGACTTTCCACGTGAACTGTCTTAGCA30.11329305135951663No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC30.11329305135951663No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCATATCAAC30.11329305135951663No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCCAC30.11329305135951663No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)