FastQCFastQC Report
Fri 3 May 2024
000000000-L7NBT_l01_n01_repeat-ITS-OOChi739.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-L7NBT_l01_n01_repeat-ITS-OOChi739.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4921
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTTCACGTGAACCGTATCAAA81816.622637675269253No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTATCAAA73014.834383255435887No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATCAAA63812.964844543791912No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC4308.738061369640317No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC1943.9422881528144686No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC1653.3529770371875633No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACTGCTCGTAATCTC1142.3166023166023164No Hit
CGGAAGGATCATTACCACATCAGCAGTGGATGTCTAGGCTCTGTCTCTTA1122.275960170697013No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC1072.174354805933753No Hit
CGGAAGGATCATTACCACATCTGCAGCAGTGGATGTCTAGGCTCTGTCTC1052.1337126600284493No Hit
CGGAAGGATCATTACCACATTCCGGCCCACGAGACCAGCAGTGGATGTCT1022.072749441170494No Hit
CGGAAGGATCATTACCACATCTCCGGCCCACGAGACCAGCAGTGGATGTC891.8085754927860191No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCAGACAGCAGTGGATGTCTAG851.7272912009754116No Hit
CGGAAGGATCATTACCACGAGACACCAGCAGTGGATGTCTAGGCTCTGTC741.5037593984962405No Hit
CGGAAGGATCATTACCACCGCAACAGCAGTGGATGTCTAGGCTCTGTCTC711.4427961796382849No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACCAGCAGTGGATGT450.9144482828693354No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACTGTATCAAA220.4470636049583418No Hit
CGGAAGGATCATTACCACTGCAGCAGTGGATGTCTAGGCTCTGTCTCTTA180.3657793131477342No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA140.2844950213371266No Hit
CAGTGGATGTCTAGGCTCTGTCTCTTATACACATCTCCGAGCCCACGAGA120.24385287543182277No Hit
CGGAAGGATCATTACCACCTAAAAACTTTTCACGTGAACCGTATCAAACA110.2235318024791709No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTTCACGTGAACCGTATCAAC90.1828896565738671No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACTGTATCAAAAA90.1828896565738671No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACTGTATCAAA80.1625685836212152No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACTGTATCAAA80.1625685836212152No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACCGTATCAAA70.1422475106685633No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCAACGTGAACTGTATCAAA70.1422475106685633No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATTAAA60.12192643771591138No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGGACTGTATCAAA60.12192643771591138No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTTCACGTGAACCGTATCAAA60.12192643771591138No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTGTCAAA60.12192643771591138No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC60.12192643771591138No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTTCACGTGAACCGTATCAAA60.12192643771591138No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCCCTTATAC60.12192643771591138No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTTCACGTGAACCGTATCAAA60.12192643771591138No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTACCAAA60.12192643771591138No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT60.12192643771591138No Hit
CGGAAGGATCATTACCACCTAAAAAACTTCCACGTGAACTGTATCAAAAC60.12192643771591138No Hit
CGGAAGGATCATTACCACATCTCCGAGCCCACGAGACTGCTCGTAAACTC50.1016053647632595No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC50.1016053647632595No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCTCACGTGAACCGTATCAAA50.1016053647632595No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTTCACGTGAACCGTGTCAAA50.1016053647632595No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTAAACTGTATCAAA50.1016053647632595No Hit
CGGAAGGATCATTACCACACCTAAAAAACTACCACGTGAACTGTATCAAA50.1016053647632595No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTTAACGTGAACCGTATCAAA50.1016053647632595No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTTCACGTGAACCGTATCAAA50.1016053647632595No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTTCACGTGAACCGTATCAGA50.1016053647632595No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)