FastQCFastQC Report
Fri 3 May 2024
000000000-L7NBT_l01_n01_repeat-ITS-OOChi725.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-L7NBT_l01_n01_repeat-ITS-OOChi725.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21788
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC841838.63594639250964No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAACCAA731433.56893702955755No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAATCAA4962.2764824674132553No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA3551.6293372498623095No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAAGCAA3361.5421332843767213No Hit
CGGAAGGATCATTACCACGAACAGCAGTGGATGTCTAGGCTCTGTCTCTT2551.170369010464476No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC2211.0143198090692125No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGTGAACCGTATCAAC1880.8628602900679273No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC1320.6058380760051404No Hit
CGGAAGGATCATTACCACATCTGACGCCAGCAGTGGATGTCTAGGCTCTG1210.5553515696713788No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGC1110.5094547457315954No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAGCCAA1000.45896823939783365No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCAACGTGAACCGTATCAAC770.3534055443363319No Hit
CGGAAGGATCATTACCACGCCAAGAACTATCCACGTGAACCGTTAACCAA770.3534055443363319No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC640.29373967321461353No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTTAACCAA580.2662015788507435No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC540.2478428492748302No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACCT520.23866348448687352No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTAACCA460.2111253901230035No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGCTAACCAA460.2111253901230035No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC450.20653570772902513No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC400.18358729575913346No Hit
CGGAAGGATCATTACCACGCCAAAAACTACCCACGTGAACCGTTAACCAA390.17899761336515513No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCCTTAACCAA370.16981824857719846No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC360.1652285661832201No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTATCAACC360.1652285661832201No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC330.1514595190012851No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC320.14686983660730676No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGCGAACCGTTAACCAA310.14228015421332846No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGGACCGTTAACCAA300.1376904718193501No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAGCCGTTAACCAA290.13310078942537176No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC280.12851110703139343No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC270.1239214246374151No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC270.1239214246374151No Hit
CGGAAGGATTATTACCACGCCAAAAACTATCCACGTGAACCGTTAACCAA260.11933174224343676No Hit
CGGAAGGATCATTACCACACCTAGAAACTTTCCACGTGAACCGTATCAAC250.11474205984945841No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTATCAACA250.11474205984945841No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC250.11474205984945841No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAACCAG250.11474205984945841No Hit
CGGAAGGATCATTACCACACCTAAAAACTATCCACGCGAACCGTATCAAC250.11474205984945841No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC230.10556269506150175No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCGCGTGAACCGTTAACCAA230.10556269506150175No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAC230.10556269506150175No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCAACGTGAACCGTTAACCAA230.10556269506150175No Hit
CGGAAGGATCATTACCCCACCTAAAAACTTTCCACGTGAACCGTATCAAC230.10556269506150175No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAACCGA220.1009730126675234No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTAAC220.1009730126675234No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)