FastQCFastQC Report
Fri 3 May 2024
000000000-L7NBT_l01_n01_repeat-ITS-OOChi705.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-L7NBT_l01_n01_repeat-ITS-OOChi705.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3420
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC93427.309941520467834No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAACCAA68820.116959064327485No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT62918.391812865497077No Hit
CGGAAGGATCATTACCACACCAAAACCTTTCCACGTGAACCGTTCCGTCT1955.701754385964912No Hit
CGGAAGGATCATTACCACATCGTCGGCAGCAGTGGATGTCTAGGCTCTGT1303.8011695906432745No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTTAAGCAA1243.625730994152047No Hit
CGGAAGGATCATTACCACACCGTATTTTTCCTTCCTCCCGTGAACTGTTT180.5263157894736842No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTACCACGTGAATCTGTACTT180.5263157894736842No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCAACGTGAACCGTATCAAC150.43859649122807015No Hit
CGGAAGGATCATTACCACACCAAAAAACTTACCACGTGAATCTGTACTTT150.43859649122807015No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTTAACCAA120.3508771929824561No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCGTTAACCAA110.32163742690058483No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCCTATCAAC90.2631578947368421No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGTATCAACC90.2631578947368421No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACCC80.23391812865497078No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAACCGTATCAA80.23391812865497078No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC70.20467836257309943No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGGATCTGTACTT70.20467836257309943No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC70.20467836257309943No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTACCACGTGAATCTGTACTT60.17543859649122806No Hit
CGGAAGGATCATTACCACGCCAAAAAAACTTACCACGTGAATCTGTACTT60.17543859649122806No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCGCGTGAATCTGTACTT60.17543859649122806No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC60.17543859649122806No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC60.17543859649122806No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACCT60.17543859649122806No Hit
CGGAAGGATTATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT50.14619883040935672No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTAACCA50.14619883040935672No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTAACACGTGAATCTGTACTT50.14619883040935672No Hit
CGGAAGGATCATTACCACATCGTCGGCCGCAGTGGATGTCTAGGCTCTGT50.14619883040935672No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAACCTGTACTT50.14619883040935672No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTAAACCGTATCAAC50.14619883040935672No Hit
CGGAAGGATCATTACCACCAAAAAAACTTACCACGTGAATCTGTACTTTC50.14619883040935672No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCGCTAACCAA50.14619883040935672No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGCGAATCTGTACTT40.11695906432748539No Hit
CGGAAGGATCATACCACACCTAAAAACTTTCCACGTGAACCGTATCAACC40.11695906432748539No Hit
CGGAAGGATCATTACCACACCAAAAGAACTTACCACGTGAATCTGTACTT40.11695906432748539No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGGACCGTTAACCAA40.11695906432748539No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGCGAACCGTTAACCAA40.11695906432748539No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC40.11695906432748539No Hit
CGGAAGGATCATTACCACGCCAAAAACTATCCACGTGAACCCTTAACCAA40.11695906432748539No Hit
CGGAAGGATCATTACCACACCAAAACCTTTCCACGTGAACCCTTCCGTCT40.11695906432748539No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGACTCTGTACTT40.11695906432748539No Hit
CGGAAGGATCATTACCACACCAGAAAAACTTACCACGTGAATCTGTACTT40.11695906432748539No Hit
CGGAAGGATCATTACCACACCAAAAACACTTACCACGTGAATCTGTACTT40.11695906432748539No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)