FastQCFastQC Report
Fri 3 May 2024
000000000-L7NBT_l01_n01_repeat-ITS-OOChi690.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-L7NBT_l01_n01_repeat-ITS-OOChi690.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38
Sequences flagged as poor quality0
Sequence length301
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC615.789473684210526No Hit
CGACCGGCGATGTATATCGGCGACACCGACGACGGTTCCGGCCTCCACCA25.263157894736842No Hit
GATGAGTCAGCGTCGAACATCGGCACCGCGAACAGGAACATCATCATCGA25.263157894736842No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG25.263157894736842No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTTCAAC25.263157894736842No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCGTTAT12.631578947368421No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGACCCGTATTCA12.631578947368421No Hit
CGTCCTGGGATGTATATTGGCGACACCTCCGAAGGCACGGGCCTGCACCA12.631578947368421No Hit
GATGAGTCAGCGTCGAACATCGGCACCGCGAACAGGAACAGCATTATCGA12.631578947368421No Hit
CGACCCGGGATGTACATAGGCGACACCGACGACGGCTCCGGCCTCCACCA12.631578947368421No Hit
AGACCGGGCATGTATATCGGCGGCGTCAGCAAAGAGGGCCTGCACCACCT12.631578947368421No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT12.631578947368421No Hit
AGTCCGGGTATGTACATCGGCGACACCGACGACGGATCGGGCCTCCACCA12.631578947368421No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCACGTGAACTGTATTAAA12.631578947368421No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCAACGTGAACCGTATCAAC12.631578947368421No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT12.631578947368421No Hit
AGGCCTGGGATGTACATAGGCGACACCGACGACGGTTCCGGCCTCCACCA12.631578947368421No Hit
CATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATTCGTTTCTTTT12.631578947368421No Hit
CGGCCGGGTATGTATATAGGGTCCACGGGCGAGCGTGGTCTGCACCACCT12.631578947368421No Hit
CGCCCAGCGATGTACATCGGCGGCACCGACACGGTCGGGTACCACCACCT12.631578947368421No Hit
CGTCCGGCTATGTATATCGGCGACACCTCGGACGGCACCGGCCTGCACCA12.631578947368421No Hit
AGCCCTGGAATGTACATTGGGTCGAACGGATCGCCCGGGCTCATGCACTG12.631578947368421No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTGAACA12.631578947368421No Hit
CGACCAGCAATGTACATTGGAGACACCTCCGATGGCACCGGGCTGCATCA12.631578947368421No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA12.631578947368421No Hit
GATGAGTCAGCGTCGAACGTGTCCGATCTGTCTCTTATACACATCTCCGA12.631578947368421No Hit
AGGCCAGGTATGTACATCGGCGATACCTCCGACGGCTCGGGCCTGCACCA12.631578947368421No Hit
GGCTTGGACATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG12.631578947368421No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA12.631578947368421No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)