FastQCFastQC Report
Fri 3 May 2024
000000000-L7NBT_l01_n01_repeat-ITS-OOChi684.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-L7NBT_l01_n01_repeat-ITS-OOChi684.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56
Sequences flagged as poor quality0
Sequence length301
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC1628.57142857142857No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT814.285714285714285No Hit
AGGCCGGCAATGTATATTGGCGATACCGATGACGGCTCGGGCCTGCATCA23.571428571428571No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG23.571428571428571No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA23.571428571428571No Hit
CGGAAGGATCATTACCACACCTAAAAAACTACCACGTGAACTGTATCAAA11.7857142857142856No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTATCAACA11.7857142857142856No Hit
CGGAAGGATCATTACCAAACCTAAAAACTTTCCACGTGAACCGTATCAAC11.7857142857142856No Hit
AGTCCGGGCATGTATATCGGCTCCACCGGCGAGCGCGGGCTGCACCACCT11.7857142857142856No Hit
AGACCGGCAATGTATATTGGCTCCACCGACTCGCGCGGGCTCATGCACTG11.7857142857142856No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCAAGTGAACCACTTTGTAT11.7857142857142856No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATCAA11.7857142857142856No Hit
CGGAAGGATCATTATCACACCAAAAACTATCCACGTGAACCACTTTGTAT11.7857142857142856No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAAAAAGGTTTCCGTAGGTG11.7857142857142856No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG11.7857142857142856No Hit
CGACCAGCGATGTATATCGGCTCGACGGGCCCGCGCGGTCTGCACCACCT11.7857142857142856No Hit
CGGCCAGGCATGTACATTGGCGACACCGACGACGGGTCCGGCCTTCACCA11.7857142857142856No Hit
CGACCGGCAATGTATATTGGCGATACCGACGACGGTTCCGGCCTCCACCA11.7857142857142856No Hit
AGGCCCGCAATGTACATAGGGTCCACCGACAGCCGCGGCCTCGGCCACCT11.7857142857142856No Hit
CGGCCCGGGATGTACATAGGCGACACCGACGATGGCTCCGGCCTGCACCA11.7857142857142856No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT11.7857142857142856No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAAACGTATTCA11.7857142857142856No Hit
CGACCGGGCATGTACATTGGCAACACCGACGACGGCTCGGGCCTTCACCA11.7857142857142856No Hit
CGACCCGGGATGTATATTGGCACCGACAACCCGTTGCACATCATCCAGGA11.7857142857142856No Hit
AGGCCTGGCATGTATATCGGCGACACCTCCGATGGCACGGGCCTGCACCA11.7857142857142856No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTTCAAC11.7857142857142856No Hit
AGGCCTGCGATGTATATTGGGAGCACCGGGGTCACCGGCCTCCACCACTG11.7857142857142856No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAAAC11.7857142857142856No Hit
AGCCCGGTATGTATATCGGCGACACCTCGGATGGCACCGGCCTGCACCAC11.7857142857142856No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTTAACCACTTTGTAT11.7857142857142856No Hit
AGCCCAGGCATGTATATTGGCTCCACGTCCGAGCGCGGGCTGCACCACCT11.7857142857142856No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)