FastQCFastQC Report
Fri 3 May 2024
000000000-L7NBT_l01_n01_repeat-ITS-OOChi683.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-L7NBT_l01_n01_repeat-ITS-OOChi683.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23169
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT739831.930596918296No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCGTTAT568224.524148646898876No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTTGTAA439418.96499633130476No Hit
CGGAAGGATCATTACCACACCAAAAAAAACTTTCCACGTGAACCGTTGTA2811.2128274850015106No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC2200.9495446501791186No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCCCGTGAACCGTATCAAC1640.7078423755880703No Hit
CGGAAGGATCATTACCACTCGGCAGCAGTGGATGTCTAGGCTCTGTCTCT1630.7035262635418016No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTACCACGTGAATCTGTACTT1250.5395140057835901No Hit
CGGAAGGATCATTACCACATCAGCAGTGGATGTCTAGGCTCTGTCTCTTA1120.4834045491820968No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTGAACA1020.4402434287194096No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCCCTTTGTAT960.4143467564417972No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTTCCACGTGAACCGTTGTAA910.39276619621045367No Hit
CGGAAGGATCATTACCACCAAAAACTATCCACGTGAACCACTTTGTATTG870.3755017480253787No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTTGTAAT810.3496050757477664No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCAACGTGAACTGTCGTTAT730.31507617937761667No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTCGTTAT570.2460183866373171No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGGACCACTTTGTAT560.2417022745910484No Hit
CGGAAGGATCATTACCACACCAAAAAACTTTCCACGTGAACCGTTGTAAT560.2417022745910484No Hit
CGGAAGGATCATTACCACACCTAAAAAAACTTTCCACGTGAACTGTATCA530.2287539384522422No Hit
CGGAAGGATCATTACCACACCAAAGACTATCCACGTGAACCACTTTGTAT520.2244378264059735No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA520.2244378264059735No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACTGTCGTTAT510.2201217143597048No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACTGTCGTTATT470.2028572661746299No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACTGTCGTTA390.16832836980448013No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTACACGTGAACCGTTGTAA360.15538003366567396No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC360.15538003366567396No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCACTTTGTA340.14674780957313652No Hit
CGGAAGGATCATTACCACCAAAAAAACTTTCCACGTGAACCGTTGTAATT340.14674780957313652No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAGCCACTTTGTAT330.1424316975268678No Hit
CGGAAGGATCATTACCACACCAAAAACAACCCACGTGAAAATGTACTGTC310.13379947343433035No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTCGTAT300.12948336138806163No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACTGTCGTTAT300.12948336138806163No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACCTTGTAT290.1251672493417929No Hit
CGGAAGGATTATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT280.1208511372955242No Hit
CGGAAGGATCATTACCACGCCAAAAAAACTTTCCACGTGAACCGTTGTAA280.1208511372955242No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGTTGTAATT280.1208511372955242No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCTGTCGTTAT270.11653502524925548No Hit
CGGAAGGATCATTACCACACCTAAAACTATCCACGTGAACCACTTTGTAT260.11221891320298676No Hit
CGGAAGGATCATTACCACACCAAAAAAACCTTCCACGTGAACCGTTGTAA260.11221891320298676No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGACCCGTTGTAA260.11221891320298676No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTCGCTAT250.10790280115671802No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTCCACGTGAACTGTCGTTAT250.10790280115671802No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACTGTCGTTATTT250.10790280115671802No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCGCTTTGTAT240.1035866891104493No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGCGAACCACTTTGTAT240.1035866891104493No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)