FastQCFastQC Report
Fri 3 May 2024
000000000-L7NBT_l01_n01_repeat-ITS-OOChi676.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-L7NBT_l01_n01_repeat-ITS-OOChi676.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17556
Sequences flagged as poor quality0
Sequence length301
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC1021158.162451583504215No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCTATACCG268315.282524493050808No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT6213.5372522214627478No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCTATACCGT2431.384142173615858No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCAACGTGAACCGTATCAAC1440.8202323991797676No Hit
CGGAAGGATCATTACCACACCTAAAACAAATCCACGTGAACCGTTAACTA850.48416495784916835No Hit
CGGAAGGATCATTACCACCTAAAAACTTTCCACGTGAACCGTATCAACAA830.47277284119389384No Hit
CGGAAGGATCATTACCACGAGACCAGCAGTGGATGTCTAGGCTCTGTCTC680.3873319662793347No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAGCCGTATCAAC610.3474595579858738No Hit
CGGAAGGATCATTACCACACCAAAAACAACCCACGTGAAAATGTACTGTC580.3303713830029619No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGGACCGTATCAAC540.30758714969241285No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATGAAC490.27910685805422647No Hit
CGGAAGGATCATTACCACACCAAAAAACCTTTCCACGTGAACCTATACCG480.2734107997265892No Hit
CGGAAGGATCATTACCACACCTAAAAACCTTCCACGTGAACCGTATCAAC480.2734107997265892No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGCGAACCGTATCAAC470.2677147413989519No Hit
CGGAAGGATCATTACCACGCCTAAAAACTTTCCACGTGAACCGTATCAAC470.2677147413989519No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTACCAAC460.26201868307131465No Hit
CGGAAGGATTATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC450.2563226247436774No Hit
CGGAAGGATCATTACCACTCGTCGGCAGCAGTGGATGTCTAGGCTCTGTC450.2563226247436774No Hit
CGGAAGGATCATTACCACACCTAAGAACTTTCCACGTGAACCGTATCAAC420.23923444976076555No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCTATACCG400.22784233310549099No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCCTATCAAC390.22214627477785376No Hit
CGGAAGGATCATTACCACACCTAAAAACTCTCCACGTGAACCGTATCAAC390.22214627477785376No Hit
CGGAAGGATCATTACCACACCTAAAGACTTTCCACGTGAACCGTATCAAC370.21075415812257917No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAA370.21075415812257917No Hit
CGGAAGGATCATTACCACTCCGACCACAGCAGTGGATGTCTAGGCTCTGT360.2050580997949419No Hit
CGGAAGGATCATTACCACACCTAAAACTTTCCACGTGAACCGTATCAACA360.2050580997949419No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATTAAC360.2050580997949419No Hit
CGGAAGGATCATTACCACACCTAAAAACTTCCCACGTGAACCGTATCAAC340.19366598313966735No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTCCATGTGAACCGTTCTACT330.18796992481203006No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCGAC320.18227386648439278No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAGC320.18227386648439278No Hit
CGGAAGGATCATTACCACACCTAAAAGCTTTCCACGTGAACCGTATCAAC310.17657780815675553No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCGCGTGAACCGTATCAAC300.17088174982911825No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTCCACGTGAACCGTATCAA300.17088174982911825No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCATTTAAAC270.15379357484620643No Hit
CGGAAGGATCATTACCACACCCAAAAACTTTCCACGTGAACCGTATCAAC270.15379357484620643No Hit
CGGAAGGATCATTACCACACCAAAAAAACTTTACACGTGAACCTATACCG260.14809751651856914No Hit
CGGAAGGATCATTACCACACCAAAAAACTTTCCACGTGAACCTATACCGT260.14809751651856914No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACAGTATCAAC260.14809751651856914No Hit
CGGAAGGATCATTACCACCAAAAAAACTTTCCACGTGAACCTATACCGTT260.14809751651856914No Hit
CGGAAGGATCATTACCACACCAAAAACAATCCACGTGAACCGTCAGAAAT250.1424014581909319No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCTACGTGAACCGTATCAAC220.12531328320802004No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTAAACCGTATCAAC220.12531328320802004No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTGTCAAC220.12531328320802004No Hit
CGGAAGGATCATTACCACAGCAGTGGATGTCTAGGCTCTGTCTCTTATAC220.12531328320802004No Hit
CGGAAGGATCATTACCACACCTAGAAACTTTCCACGTGAACCGTATCAAC210.11961722488038277No Hit
CGGAAGGATCATTACAACACCTAAAAACTTTCCACGTGAACCGTATCAAC210.11961722488038277No Hit
CGGAAGGATCATTACCACACCTGAAAACTTTCCACGTGAACCGTATCAAC200.11392116655274549No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACTGTATCAAC190.10822510822510822No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTACACGTGAACCGTATCAAC190.10822510822510822No Hit
CGGAAGGATCATTACCACTCGTCAGCAGTGGATGTCTAGGCTCTGTCTCT180.10252904989747096No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATAAAC180.10252904989747096No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)