FastQCFastQC Report
Tue 7 Nov 2023
000000000-L65MN_l01_n01_MmdAPathoPool3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-L65MN_l01_n01_MmdAPathoPool3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences165
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT9557.57575757575758No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG84.848484848484849No Hit
GATGAGTCAGCGTCGAACATGCAACATCTATTGCATGATACGTGGCATTT31.8181818181818181No Hit
GATGCGTCCGCGTCGAACATGCACCCTTTATTGCATGATACGTGGCATTT21.2121212121212122No Hit
GATGAGTCATCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT21.2121212121212122No Hit
GATGAGTCAGCGTCAAACATGCAACATTTATTGCATGATACGTGGCATTT10.6060606060606061No Hit
GAATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATT10.6060606060606061No Hit
GATGCGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.6060606060606061No Hit
GATGCGTCAGCGTCGAACATGCACCCTTTATTGCATGATACGTGGCATTT10.6060606060606061No Hit
TACCCTTACGATGTTCCTGATTACGCTTCTGTGTCTCGAAGGTTTCGTTT10.6060606060606061No Hit
GATGAGTCTGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.6060606060606061No Hit
CTGTAAAGATAAATGGGTCATCTAATCTTTCTGGAACAGCTCAACCCTTC10.6060606060606061No Hit
CTGTACATAAATGGTTCATCTAAAGAGTATGGAGCTGGGATTGACTCGGC10.6060606060606061No Hit
TACCCTTACGATGTTCCTGATTACGCCGTGGGCTCGGAGATGTGTATAAG10.6060606060606061No Hit
GATGAGCCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.6060606060606061No Hit
GATGCGTCCGCGTCTAACATGCACCCTTTATTGCATGATACGTGGCATTT10.6060606060606061No Hit
ACGCCCAAGCAGATCTACAACGATCCCGCCAACCTGTTCGTCGCCAGCTT10.6060606060606061No Hit
GATGCGTCAGCGTCGAACATGCACCATTTATTGCATGATACGTGGCATTT10.6060606060606061No Hit
GATGAGTCATCGTCGCCCATGCAACATTTATTGCATGCTACGTGGCATTT10.6060606060606061No Hit
ACACCAAAGCAGATTGACACCGATACGGCCCACCTGTTCGTCGCCAGCTT10.6060606060606061No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTGCGTCTAGGATTGCCACAAT10.6060606060606061No Hit
CTGTACAGATAAATGGGCCATCTAAAGAGTATGGAGCTGGGAATGACTCG10.6060606060606061No Hit
CTGTAAAGATAAATGGGCCATCTAAAGAGTATGGAGCTGGGATTGACTCG10.6060606060606061No Hit
GATGAGTCAGCGTCGAACATTCAACATTTATTGCATGATACGTGGCATTT10.6060606060606061No Hit
TACCCTTACGATGTTCCTGATTACGCGCGACGTTTTCGTTTGGGACTCTG10.6060606060606061No Hit
TACCCTTACGATGTTCCTGATTACGCTCCCGGATTTTCTTAGGGATTCTT10.6060606060606061No Hit
TACCCTTACGATGTTCCTGTTGTTGCCAAAGCTGAACCCTTCTGTCTCTT10.6060606060606061No Hit
GATGAGTCAGCGTCGAACATGCAACCTTTATTGCATGATACGTGGCATTT10.6060606060606061No Hit
ACACCCAAGCAGATCTACAACGACCCGGCCAACCTGTTCGTGGCCAGCTT10.6060606060606061No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACATGGCATTT10.6060606060606061No Hit
TACCCTTACGATGTTCCTGATTACGCTGGGATCGAAGATTTCGTTGGGGA10.6060606060606061No Hit
TACCCTTACGATGTTCCTGATTACGCCCGGATCTCTCATAGTTCACTGTG10.6060606060606061No Hit
GATGCGTCCGCGTCTAACATGCACCCTTTATTTCCTGATACGTGTCATTT10.6060606060606061No Hit
GATGAGTCAGCGTCGAACATGCACCCTTTATTGCATGATACGTGGCATTT10.6060606060606061No Hit
TACCCTTACGATGTTCCTGATTACGCCTCGAAGATTTCCTGCGGGCCTCT10.6060606060606061No Hit
GAGGCGTCCGCGTCTAACATGCACCCTTTATTTCCTGATACGTGTCATTT10.6060606060606061No Hit
TACCCTTACGATGTTCCTGATTACGCTCGAAGATTTCGTTGGGGATCTGT10.6060606060606061No Hit
CTGTAAATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCGGC10.6060606060606061No Hit
TACCCTTACGATGTTCCTGATATCGTCTAGCCATTCGCCACGCGGCCAAT10.6060606060606061No Hit
GATGAGTCAGCGTCGAACATGCAACATTTAATGCATGATACGTGGCATTT10.6060606060606061No Hit
GATGAGTCCGCGTCGAACATGCAACATTTATTGCATGATACGTTGCATTT10.6060606060606061No Hit
CTGTAAAGATAAATGGGTCATCTAATCTTGTTGACAAAGCTGAACCCTTC10.6060606060606061No Hit
GATGACTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.6060606060606061No Hit
TACCCTTACGATGTTCCTGATTACGCGTCGTGGCTCGAAGATTTCGTTGG10.6060606060606061No Hit
GATGAGTAAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.6060606060606061No Hit
GATGAGTCAGCGTCGAACATGCAACATTGATTACATGATACGTGGCATTT10.6060606060606061No Hit
GATGAGTCAGCGTCGAACACGCAACATTTATTGCATGATACGTGGCATTT10.6060606060606061No Hit
TACCCTTACGATGTTCCTGATTACGCTGTGCGCGCACATTGCGTTGGGGG10.6060606060606061No Hit
TACCCTTACGATGTTCCTGATTACGCCTTGGCCTCGAGGATTTCGTTGGG10.6060606060606061No Hit
ACGCCCAAGCAGATCTACAACTGCATGCAGAACGTCTATGCCGACCAGCA10.6060606060606061No Hit
TACCCTTACGATGTTCCTGATTACGGTCCAAGATGATGTCTTTGAAGATT10.6060606060606061No Hit
GATGAGTCAGCGTCTAACATGCAACATTTATTGCATGATACGTGGCATTT10.6060606060606061No Hit
GATGAGTCAGCGTCGTACATGCACCATTTATTGCATGATACGTGGCATTT10.6060606060606061No Hit
GCTGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.6060606060606061No Hit
TACCCTTACGATGTTCCTGATTACGCCTCGAAGATTTCGTTGGGGACTCT10.6060606060606061No Hit
TACCCTTACGATGTTCCTGATTACGCGCGACGTCTTCGTTTGGGACTCTG10.6060606060606061No Hit
TACCCTTACGCTGTTCCTGATTACGCTCAAGGATTTGGTTGGGGACTCAA10.6060606060606061No Hit
TACCCTTACGATGTTCCTGATATAGTCTAGCCAGACGAGTCGTGGTAAAT10.6060606060606061No Hit
GATGAGTCGGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.6060606060606061No Hit
TACCCTTACGATGTTCCTGATGACCCGGCTGAGGCCTTCTGACTCTTATA10.6060606060606061No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)