FastQCFastQC Report
Tue 7 Nov 2023
000000000-L65MN_l01_n01_MmdAPathoPool2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-L65MN_l01_n01_MmdAPathoPool2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences191
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT9047.12041884816754No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG2412.56544502617801No Hit
CTGTAAAGATAAATGGGCCATCTAAAGAGTATGGAGCTGGGATTGACTCG42.094240837696335No Hit
GATGAATCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT21.0471204188481675No Hit
GATGAGTCAGCGTCGAACATGCAACATCTATTGCATGATACGTGGCATTT21.0471204188481675No Hit
GATGAGTCAGCGTCGAACAAGCAACATTTATTGCATGATACGTGGCATTT21.0471204188481675No Hit
GATGCGTCCGCGTCTAACATGCACCCTTTATTTCCTGATACGTGTCATTT21.0471204188481675No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGACATTT21.0471204188481675No Hit
GATGAGTCATCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT21.0471204188481675No Hit
GATGAGTCAGCGTCGAACATGCACCATTTATTGCATGATACGTGGCATTT21.0471204188481675No Hit
TGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCGG10.5235602094240838No Hit
GATGCGTCCGCGTCTAACATGCACCCGTTATTTCATGATACATGTCATTT10.5235602094240838No Hit
GAGGAGTCAGCGTCTAACATGCACCCTTTATTGCATGATACGTGGCACTT10.5235602094240838No Hit
TACCCTTACGATGTTCCTATTACGCGTGGTCGAGAATTTCTTTGTGGACT10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATACCGTCTAGCCAGCCGATTGGTGTCAAAG10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCCTCGGAGGATTCGTTCGTGACGCT10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCTGTGCGCTCAGATTTCGGTGGGAC10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCTGTGCTCGCAGATTTCTCGTGGGG10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCCTAGTTCAGTGACAGTCCGCCTGG10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGGTCTGTTGGCTCAATGAGTTCGGTG10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCATAAGAGTTTGCCAGCCCGCCTAA10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCTTAATGATTTGGTTTGGGACTCTT10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCCTCGCAGGTTTCTTGGGGTCCTCT10.5235602094240838No Hit
GATGAGTCCGCGTCGAACATGCACCCTTTATTGCATGATACGTGTCATTG10.5235602094240838No Hit
GATGAGTCAGCGTCGAACATGCAACATATATTGCATGATACGTGGCATTT10.5235602094240838No Hit
TACCCTTACTATGTTCCTGATTACGCATGTCTGGATGCCAGCTTGCCTAA10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCGGTGCTCGCACATTTAGTTGGGGA10.5235602094240838No Hit
GAGGCGTCCGCGTCTAACATGCACCCTCTATTTCATGATACGTGTCATTT10.5235602094240838No Hit
ACGCCCAAGCAGATTTACACAACCAGTCCAACCGCAAGTTACTGTCTCTT10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCATAATTCAGTGCCAGCCCGCCTAA10.5235602094240838No Hit
GATGCGTCAGCGTCGAACATGCACCATTTATTGCATGATACGTGGCATTT10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCTCGACGAGATGGTTTGGGAGTCTA10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGGTCTGTGGGCTCGAAGATTTCGTTG10.5235602094240838No Hit
GGATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATT10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGTTCGAAGACTTCACCCTTCTTTCTC10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACTCGCATGTTACAAATCTGAACCCTTG10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCTCCGGGCTCGAAGATTTCTTTGGT10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCTCTACGTTTTCGTTGGGGGCTCTT10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCGGGGGGTTCGAATTTTCCTTTGGG10.5235602094240838No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATGCGTGGCATTT10.5235602094240838No Hit
GATGAGTCAGCGTCGAACATGCAACCTTTATTGCATGATACGTGGCATTT10.5235602094240838No Hit
CTGTAAAGATAAATGGGCCGCCTAAAGAGTATGGAGCTGGGATTGACTCG10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCGGCGATCGCAGATTTAGTTGGGGG10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCTCTACGATTTCGTTTGGGACTCTG10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCTTCGTGGGCTCGAAGATTTCGTTG10.5235602094240838No Hit
GATGAGTCCGCGTCTAACATGCACCATTTATTGCCTGATACGTGGCATTT10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGGTCCGGGCCTCGAATATTTCGCTGA10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCGCCTTGGGCTTGGATCATTCCTTT10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCTGGGCTCGAAGATTTCGTTGGGGA10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCTTTTCGTGGTGATAAATGGAGGCG10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCTCTGCGGTCTCGTAGCTTGCCTCT10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCTCGAAGATTTAGGTTGGGGATCTT10.5235602094240838No Hit
CGGTTCGTCCGCTTCTGCGATGCGTTCGAGATTCCGATCGTGACGTTCGT10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCTCGGTCTCGAAGATTTCGTTGGGG10.5235602094240838No Hit
GATGCGTCCGCGTCTAACATGCACCCTTTATTTCATGATACGTGGCATTT10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCCGTGGGCTAGAATATTTCTTTGGT10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCTCTGTTGGATCGAAGATTGCCTTT10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCATGATTCTGTGATAGCGCGCCGAA10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCTGAGCTCAGAGATTTCGCTGGGGA10.5235602094240838No Hit
GATGAGTCAGCGTCTAACATGCAACATTTATTGCATGATACGTGGCATTT10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCCTCTCTGGGCTCGAAGATGTCGTT10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCTCTACGAGCTCGTTGGGGACTCTG10.5235602094240838No Hit
GATGAGTCAGCGTCGCACATTCAACATTTATTGCATGATACGTGGCATTT10.5235602094240838No Hit
CTGTAAAGATAAATGGGTCATCTAACCTTTTTGGCACGGCGAATAGCTTA10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCATAATTCACTGCCATCCCCCCTAA10.5235602094240838No Hit
GATGAGTCAGCGTCGAACAGGTCGAGCTCGATGTCGCGGTCGGTATCGTT10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATTACGCGCTAGGAGTTCGTTGGGGACTCTG10.5235602094240838No Hit
TACCCTTACGATGTTCCTGATCTTGGGCTCGAAGATTTCGTTGGGGTCTC10.5235602094240838No Hit
GATGAGTCGGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.5235602094240838No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)