FastQCFastQC Report
Tue 7 Nov 2023
000000000-L65MN_l01_n01_MmdAPathoPool1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-L65MN_l01_n01_MmdAPathoPool1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT6049.586776859504134No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG1310.743801652892563No Hit
GATGAGTCATCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT64.958677685950414No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGAGATCCCGATCGTGACGTTCGT21.6528925619834711No Hit
TACCCTTACGATGTTCCTGATTACGCTCGAAGATTTCGTTGGGGACTCTG21.6528925619834711No Hit
GATGAGTCAGCGTCGAACATGCACCCTTTATTGCATGATACGTGGCATTT10.8264462809917356No Hit
CTGTAAAGATAAATGGGTCATCTAAAGCGTATGGAGCTGGGATTGACTCG10.8264462809917356No Hit
TACCCTTACGATGTTCCTGATTCGGGGTTCGAAGATTTCGTTGGTGACTC10.8264462809917356No Hit
GATGCGTCAGCGTCTAACACGCAACATTTATTGCATGATACGTGGCATTT10.8264462809917356No Hit
TACCCTTACGATGTTCCTGATTACGCATAATGTACAAACAGCCCGCCTAA10.8264462809917356No Hit
ACACCCAAGCAGATTTACAACGATCCGGCCAACCTCTTCGTAGCCAGCTT10.8264462809917356No Hit
TACCCTTACGATGTTCCTGATTACGCCGAGGGCTTTAACATTCCGTTGGA10.8264462809917356No Hit
ACGCCCAAGCAGATCTACAACGATCCCGCCAACCTGTTCGTCGCCAGTTT10.8264462809917356No Hit
TACCCTTACGATGTTCCTGATTACGCGCCGGGGTAGATTATTTCGTTGGT10.8264462809917356No Hit
TACCCTTACGATGTTCCTGATTACGCATAAGAGTTTGCCAGCCCGCCTAA10.8264462809917356No Hit
GATGACTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.8264462809917356No Hit
ACGCCCAAGCAGATCTACGACATGACCTGCGAGCCAATGGCGCTGTCCTA10.8264462809917356No Hit
TACCCTTACGATGTTCCTGATTACGCCGTGTCTCGAAGATTTCGTTGGGG10.8264462809917356No Hit
ACACCCAAGCAGATTTACCCCGATCCGGCCAACCTGTTCGTCGCCAGTTT10.8264462809917356No Hit
GATGAGTCAGCGTCGAACATGCAATATTTATTGCATGATACGTGGCATTT10.8264462809917356No Hit
TACCCTTACGATGTTCCTGATTACGCTTAGGCTCGAAGATTTCGTTGGGT10.8264462809917356No Hit
CTGTAAAGCTAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG10.8264462809917356No Hit
TACCCTTACGATGTTCCTGATTACGCTTGGGCTCGAAGATTTCGTTGGGA10.8264462809917356No Hit
TACCCTTACGATGTTCCTGATTACGCATAGGCGCGAAGCTGTCGGTCTGA10.8264462809917356No Hit
GATGAGTCAGCGTCTAACATGCAACATTTATTGCATGATACGTGGCATTT10.8264462809917356No Hit
TACCCTTACGATGTTCCTGATTACGCATAATTCCGTGCCTGCCCGCCTGA10.8264462809917356No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGAGATCCCGATCGTGACGATCGT10.8264462809917356No Hit
GATGAGTCAGCGTCTAACATGCAACATTTATTGCATGATACGTGACATTT10.8264462809917356No Hit
TACCCTTACGATGTTCCTGATTACGCATAATGTGCAAACAGCCCGCCTAA10.8264462809917356No Hit
TACCCTTACGATGTTCCTGATTACGCTCTACGATTTCGTTTGGGACTGTT10.8264462809917356No Hit
GATGAGTCAGCGTCTAACATGCAACATTTATTGCATAATACGTGGCATTT10.8264462809917356No Hit
TACCCTTACGATGTTCCTGATTACGCTGGGCTCGAAGGTTTCGTTGGGGA10.8264462809917356No Hit
TACCCTTACGATGTTCCTGATTACGCTCGAAGATTTCGTTGGGGACTCTT10.8264462809917356No Hit
TACCCTTACGATGTTCCTGATTACGCGCCTCGATTTCGTTGGGGACTCTG10.8264462809917356No Hit
GATGAGTCAGCGTCGAACATGCAACATCTATTGCATGATACGTGGCATTT10.8264462809917356No Hit
TACCCTTACGATGTTCCTGATTACGCTGTGATCTAAGATTTCGTTGGGGA10.8264462809917356No Hit
GATGCGTCCGCGTCTAACATGCACCCTCTATTGCATGATACGTGGCATTT10.8264462809917356No Hit
GATGAGTCGGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.8264462809917356No Hit
TACCCTTACGATGTTCCTGATTACGCTGTGCGCGCAGGTTGGGCGGCGAC10.8264462809917356No Hit
TACCCTTACGATGTTCCTGATTACGCTTCTTGTGGTAGAATATTTAGTTG10.8264462809917356No Hit
GATGAGTCAGCGTCGAACATGCAACCTTTATTGCATGATACGTGGCATTT10.8264462809917356No Hit
TACCCTTACGATGTTCCTGATAACGTCTAGCCAGCCGAGTCGTGTTAAAT10.8264462809917356No Hit
CTGTAAAGATAAATGGGTCATCTCATGAGCATGGAGCTTTGATTGACTCC10.8264462809917356No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)