FastQCFastQC Report
Tue 7 Nov 2023
000000000-L65MN_l01_n01_MalKPathoPool3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-L65MN_l01_n01_MalKPathoPool3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103914
Sequences flagged as poor quality0
Sequence length301
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG6365261.25449891256232No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGAGATCCCGATCGTGACGTTCGT56575.443924783955963No Hit
CGGTTCGTGCGCTTCTGCGATGCGTTCGAGATCCCGATCGTGACCTTCGT24602.367342225301692No Hit
CGGTTCGTCCGCTTCTGCGACGCGTTCGAGATCCCGATCGTGACGTTCGT22962.2095194102815787No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGAGATCCCGATCGTGACCTTCGT22652.179687048905826No Hit
CGGTTCGTGCGCTTCTGTGATGCGTTCGAGATTCCGATCGTGACGTTCGT17721.70525626960756No Hit
CTGTAAAGGTAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG15661.5070154165944916No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGAGATCCCGATCGTGACTTTCGT11851.1403660719441076No Hit
CGGTTCGTCCGCTTCTGCGATGCGTTCGAGATCCCGATCGTGACCTTCGT9660.9296148738379815No Hit
CGGTTCGTGCGCTTCTGCGATGCGTTCGAGATTCCGATCGTCACCTTCGT9220.8872721673691707No Hit
CGGTTCGTCCGCTTCTGCGACGCGTTCGAGATCCCGATCGTGACCTTCGT8710.8381931212348672No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGACATCCCGATCGTGACCTTCGT7740.7448467001558982No Hit
CGGTTCGTCCGCTTCTGTGATGCGTTCGAGATTCCGATCGTGACGTTCGT6600.6351405970321612No Hit
CGGTTCGTGCGCTTCTGCGATGCGTTCGATATTCCGATCGTGACCTTCGT6200.5966472275150605No Hit
CTGTAAAGCTAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG6040.5812498797082203No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGAGATTCCGATCGTGACCTTCGT5770.5552668552841773No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGAGATTCCGATCGTGACGTTCGT5040.4850164559154686No Hit
CGGTTCGTCCGCTTCTGCGACGCGTTCGAGATCCCGATCGTGACTTTCGT4690.45133475758800545No Hit
CGGTTCGTCCGCTTCTGCGATGCGTTCGAGATTCCGATCGTCACCTTCGT3300.3175702985160806No Hit
CGGTTCGTCCGCTTCTGCGACGCGTTCGACATCCCGATCGTGACCTTCGT3120.3002482822333853No Hit
CTGTAAAGATACATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG2980.28677560290240006No Hit
CTGTCAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG2860.2752275920472699No Hit
CGGTTCGTGCGCTTCTGCGATGCGTTCGAGATCCCGATCGTGACGTTCGT2730.26271724695421217No Hit
CGGTTCGTGCGCTTCTGCGATGCGTTCGATATTCCGATCGTGACGTTCGT2700.25983024424042955No Hit
CGGTTCGTGCGCTTCTGCGATGCGTTCGAGATTCCGATCGTGACGTTCGT2570.24731989914737185No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGACATTCCGATCGTGACCTTCGT2360.22711088015089398No Hit
CGGTTCGTCCGCTTCTGCGACGCGTTCGAGATTCCGATCGTGACCTTCGT2340.22518621167503897No Hit
CGGTTCGTGCGCTTCTGCGATGCGTTCGAGATCCCGATCGTCACCTTCGT2330.22422387743711147No Hit
CTGTAAAGATAAATGGGCCATCTAAAGAGTATGGAGCTGGGATTGACTCG2210.21267586658198123No Hit
CGGTTCGTGCGCTTCTGCGACGCATTCGAGATCCCGATCGTGACGTTCGT2150.20690186115441614No Hit
CTGTAAAGATAAATGGGTCATCTAAAGTGTATGGAGCTGGGATTGACTCG2080.20016552148892355No Hit
CGGTTCGTACGCTTCTGCGACGCGTTCGAGATCCCGATCGTGACGTTCGT2080.20016552148892355No Hit
CGGTTCGTCCGCTTCTGCGATGCGTTCGATATTCCGATCGTGACCTTCGT1930.18573050792001078No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGATATCCCGATCGTGACGTTCGT1930.18573050792001078No Hit
CGGTTCGTCCGCTTCTGCGACGCGTTCGAGATTCCGATCGTGACGTTCGT1670.16070981773389534No Hit
CTGTAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCGG1630.15686048078218529No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGAGATCCCGATCGTCACCTTCGT1410.1356891275477799No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGAGATTCCGATCGTCACCTTCGT1360.1308774563581423No Hit
CTGTACAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG1260.12125411397886715No Hit
CGGTTCGTCCGCTTCTGCGATGCGTTCGAGATCCCGATCGTGACGTTCGT1130.10874376888580942No Hit
CGGTTCGTGCGCTTCTGCGATGCGTTCGAAATTCCGATCGTCACCTTCGT1080.10393209769617184No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)