FastQCFastQC Report
Tue 7 Nov 2023
000000000-L65MN_l01_n01_MalKPathoPool1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-L65MN_l01_n01_MalKPathoPool1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88610
Sequences flagged as poor quality0
Sequence length301
%GC48

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG6033868.09389459428958No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGAGATCCCGATCGTGACGTTCGT43824.945265771357635No Hit
CGGTTCGTCCGCTTCTGCGACGCGTTCGAGATCCCGATCGTGACGTTCGT16801.8959485385396682No Hit
CGGTTCGTGCGCTTCTGCGATGCGTTCGAGATCCCGATCGTGACCTTCGT15451.7435955309784448No Hit
CTGTAAAGGTAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG15151.7097393070759508No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGAGATCCCGATCGTGACCTTCGT13101.4783884437422412No Hit
CGGTTCGTCCGCTTCTGCGATGCGTTCGAGATCCCGATCGTGACCTTCGT6580.7425798442613701No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGAGATTCCGATCGTGACGTTCGT6160.6951811307978784No Hit
CGGTTCGTGCGCTTCTGCGATGCGTTCGATATTCCGATCGTGACGTTCGT5760.6500394989278863No Hit
CTGTAAAGCTAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG5150.5811985103261483No Hit
CGGTTCGTCCGCTTCTGCGACGCGTTCGAGATCCCGATCGTGACCTTCGT5090.5744272655456495No Hit
CGGTTCGTGCGCTTCTGCGATGCGTTCGATATTCCGATCGTGACCTTCGT4180.4717300530414174No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGAGATCCCGATCGTCACCTTCGT4110.46383026746416883No Hit
CGGTTCGTGCGCTTCTGCGATGCGTTCGAGATCCCGATCGTGACGTTCGT4090.4615731858706692No Hit
CGGTTCGTGCGCTTCTGTGATGCGTTCGAGATTCCGATCGTGACGTTCGT3900.440130910732423No Hit
CGGTTCGTGCGCTTCTGCGATGCGTTCGAGATTCCGATCGTCACCTTCGT3680.4153030132039273No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGACATTCCGATCGTGACCTTCGT3670.4141744724071775No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGACATCCCGATCGTGACCTTCGT2430.274235413610202No Hit
CGGTTCGTCCGCTTCTGCGACGCGTTCGAGATTCCGATCGTGACGTTCGT2380.268592709626453No Hit
CTGTAAAGATACATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG2360.2663356280329534No Hit
CGGTTCGTCCGCTTCTGCGATGCGTTCGATATTCCGATCGTGACGTTCGT2090.2358650265207087No Hit
CTGTAAAGATAAATGGGTCATCTAAAGTGTATGGAGCTGGGATTGACTCG2010.2268367001467103No Hit
CGGTTCGTGCGCTTCTGCGATGCGTTCGATATTCCAATCGTGACCTTCGT1910.21555129217921226No Hit
CGGTTCGTGCGCTTCTGCGATGCGTTCGACATCCCGATCGTCACCTTCGT1790.20200880261821463No Hit
CGGTTCGTCCGCTTCTGCGACGCGTTCGAGATCCCGATCGTCACCTTCGT1700.19185193544746643No Hit
CGGTTCGTCCGCTTCTGCGATGCGTTCGAGATCCCGATCGTGACGTTCGT1560.1760523642929692No Hit
CTGTAAAGATAAATGGGCCATCTAAAGAGTATGGAGCTGGGATTGACTCG1520.17153820110596996No Hit
CGGTTCGTACGCTTCTGCGACGCGTTCGAGATCCCGATCGTGACGTTCGT1520.17153820110596996No Hit
CGGTTCGTGCGCTTCTGCGATGCGTTCGAAATTCCGATCGTCACCTTCGT1500.16928111951247038No Hit
CTGTAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCGG1480.16702403791897077No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGATATCCCGATCGTGACGTTCGT1460.16476695632547117No Hit
CGGTTCGTGCGCTTCTGCGACGCATTCGAGATCCCGATCGTGACGTTCGT1460.16476695632547117No Hit
CGGTTCGTCCGCTTCTGCGATGCGTTCGATATTCCGATCGTGACCTTCGT1440.16250987473197157No Hit
CGGTTCGTCCGCTTCTGCGACGCGTTCGACATTCCGATCGTGACCTTCGT1420.16025279313847196No Hit
CGGTTCGTCCGCTTCTGTGATGCGTTCGAGATTCCGATCGTGACGTTCGT1350.15235300756122333No Hit
CGGTTCGTCCGCTTCTGCGATGCGTTCGAGATTCCGATCGTCACCTTCGT1330.15009592596772373No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGAGATCCCGATTGTGACCTTCGT1280.14445322198397473No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGAGATTCCGATCGTGACCTTCGT1210.1365534364067261No Hit
CTGTCAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG1110.12526802843922807No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGAAATCCCGATCGTGACGTTCGT1060.11962532445547906No Hit
CTGTAAAGATAAATGTGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG1040.11736824286197944No Hit
CGGTTCGTGCGCTTCTGCGATGCGTTTGAAATTCCGATCGTCACCTTCGT970.10946845728473086No Hit
CGGTTCGTGCGCTTCTGTGACGCGTTCGAGATTCCGATCGTGACGTTCGT940.10608283489448145No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTCTGGAGCTGGGATTGACTCG920.10382575330098183No Hit
CTGTAAAGATAAATGGGTCATCTAACGAGTATGGAGCTGGGATTGACTCG900.10156867170748222No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)