FastQCFastQC Report
Tue 7 Nov 2023
000000000-L65MN_l01_n01_LowSpecHamPathoPool4.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-L65MN_l01_n01_LowSpecHamPathoPool4.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences256
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG7529.296875No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT3915.234375No Hit
CTGTAAAGATAAATGGGCCATCTAAAGAGTATGGAGCTGGGATTGACTCG72.734375No Hit
GATGAGTCAGCGTCGAACATGCAACATCTATTGCATGATACGTGGCATTT41.5625No Hit
GATGAGTCAGCGTCGAACATGCAACATTTAATGCATGATACGTGGCATTT41.5625No Hit
GATGCGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT41.5625No Hit
ACGCCCAAGCAGATTTACAACCGCATGCAGAACGTCTATGCCGACCAGCA41.5625No Hit
TACCCTTACGATGTTCCTGATTACGCTCGAAGATTTCGTTTGGGACTCTG20.78125No Hit
ACACCCAAGCAGATCTACAACCGCATGCAGAACGTCTATGCCGACCAGCA20.78125No Hit
ACACCCAAGCAGATTTACAACCGCATGCAGAACGTCTATGCCGACCAGCA20.78125No Hit
GCTGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT20.78125No Hit
TACCCTTACGATGTTCCTGATTACGCTCTACGATTTCGTTTGGGACTCTT20.78125No Hit
CTGTAAAGATAAATGGGCCATCTAAAGAGTATGGAGCTGGGATTGACTTG10.390625No Hit
CTGTAAAGGTAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG10.390625No Hit
TACCCTTACGCTGTTCCTGATTACGCGTCTGTTTCTCGAATCATTCGTTT10.390625No Hit
GAGGCGTCCGCGTCTAACATGAACCCTTGATGTCTTGATACGTGTCATTT10.390625No Hit
ACACCCAAGCAGATTTACAACCGCATTCAGAACGTCTATGCCGTCCAGCA10.390625No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAATATGGAGCTGGGATTGACTCG10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCATAAGATTTTGCCAGCCCGCCTAA10.390625No Hit
ACACCCAAGCAGCTCTACAACCGCCTGCATCACGTCTATTCAGACAAGCA10.390625No Hit
CTGTCAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG10.390625No Hit
ACACCCAAGCAGATTTACGAGTCGTGGTAACTTTAATCTGGCTGTGGTCC10.390625No Hit
ACACCCAAGCAGATCTACGATTCGTGGTAAATTTAATCTGGCTGTGGGCC10.390625No Hit
TACCCTTACGATGTTCCTGATTACGGTCGGTGTTCTCGAAGCTTTCGCTG10.390625No Hit
CTGTAAAGATACATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG10.390625No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGATGGGATTGACTCG10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCTACGAGGTGGCACTACGATTTCGA10.390625No Hit
GAGGAGTCAGCGTCGAACATGCAACATTTAATGCATGATACGTGGCATTT10.390625No Hit
GAGGAGTCAGCGTCCAACATGCACCATTTATTGCCTGATACGTGGCATTT10.390625No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTCTGGAGCTGGGATTGACTCG10.390625No Hit
CTGTAAAGATAAATGGGCCACCTAAAGAGTATGGAGCTGGGATTGACTCG10.390625No Hit
ACACCCAAGCAGATTTACACCGATCCGGCCAACCTGTTCGTCGCCAGCTT10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCGCTCTGGGCTCGAAGATTTCGTTG10.390625No Hit
ACGCCCAAGCAGATTTACAACGACCCGGCCCACCTGTTCTTGGCCCGCTT10.390625No Hit
CAGCACAAATACATTTCTCATCAAAAGAGTATGGAGCTGGGAGTGACTCG10.390625No Hit
ACGCCCAAGCAGATTTACAACGACCCGGCCAACCTGTTCGTGGCCAGCTT10.390625No Hit
ACACCCAAGCAGATTTACGAGCCGTGGTAAATTTAATCTGGCTGTGGTCC10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCTCGAAGATTTCGTTGGGGACTCTG10.390625No Hit
ACACCCAAGCAGATTTACAACGACCCGGCCAACCTGTTCGTGGCCAGCTT10.390625No Hit
GAGGCGTCCGCGTCTAACATGCACCCTTTATTTCATGATACGTGGCATTT10.390625No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGACATTT10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCTGAGCGCGCAGATTGCGCTGGGGA10.390625No Hit
TACCCTTACGATGTTCCTGATTACGGTTCGTGGCTCGAAGATTTCGTTGG10.390625No Hit
ACACCCAAGCAGATCTACAACGACCCGGCCAACCTGTTCGTCGCCAGCTT10.390625No Hit
CGGTTCGTCCGCTTCTGCGATGCGTTCGAGATCCCGATCGTGACCTTCGT10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCGTTGGCTCGAAGATTTCGTTGGGG10.390625No Hit
GATGAGTCCGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.390625No Hit
GATGAGTCAACATCAAACATGCAACATTTATTGCATGATACGTGGCATTT10.390625No Hit
ACGCCCAAACCGATCTACAACGACCCGGCCAACCTGTTCGTGGCCAGCTT10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCGCTGTGGGCTCGAAGATTTCGTTG10.390625No Hit
CTGTAAAGATAAATGGGTCATCTACAGAGTATGGAGCTGGGATTGACTCG10.390625No Hit
GATGAGTCAGCGTCGAACACGCAACATTTATTGCATGATACGTGGCATTT10.390625No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGGATGGAGATGGGATTGACTCG10.390625No Hit
ACACCCAAGCAGATCTACGAGTCGTGGTAAATTTAATCTGGCTGTGGTCC10.390625No Hit
GATGAGTCAGCGTCTAACATGCAACATTTATTGCATGATACGTGGCATTT10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCTCGAAGATTTCGTTGGGGTTCTGT10.390625No Hit
TACCCTTACGCTGTTCCTGCTTACGGTCTCTGTTCTCGAATCTTTCGCTT10.390625No Hit
GATGAGTCATCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCTGTGCTCTAAGATTTCGTTGGGGA10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCTTCGTGTCTAGAATTTCGTGTGGG10.390625No Hit
TACCCTTACGATGTTCCTGATTACTCTTATCGTGGTGTTAAAGGAAGGCG10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCTCCAAGATTTCGTTTGGGACTCTG10.390625No Hit
GATGAGTCAGCGTCGAACATGCACCATTTATTTCATGATACGTGGCATTT10.390625No Hit
GATGCGTCCGCGTCGAACATGCACCCTTTATTGCATGATACGTGGCATTT10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCCTGGGGACTCCAATGTTGCGTCGG10.390625No Hit
ACACCCAAGCAGATCAACCGCAAGTGACTGTCTCTTATACACATCTCCGA10.390625No Hit
GATGAGTCAGCGTCAAACATGCAACATTTATTGCATGATACGTGGCATTT10.390625No Hit
TACCCTTACGATGTTCCTGATTACGGTCTGGGTCGTAGAATTTGTCGGTG10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCTGTGTGCGAGTATATTTCCGTGGT10.390625No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGGGCTGGGATTGACTCG10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCGTCTGTGGCTCGGAGAATTCGTTG10.390625No Hit
CGGTTCGTGCGCTTCTGCGATGCGTTCGAGATCCCGATCGTGACCTTCGT10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCCGGGCCCGAAGAGTCCGGTGGGGA10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCATAAGTGTTTGCCAGCCCGCCTAA10.390625No Hit
ACACCCAAGCAGATCTACACCACGACCGACGGCCGCGCGCTCGACACCAT10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCTCGTAGATTTCGGTTGGGACTCTG10.390625No Hit
TACCCTTACGATGTTCCTGATTACGGTTCGAGGCTCGAATAGGGCGTCGT10.390625No Hit
ACGCCCAAGCAGATCTACACCGATCCGGCCAACCTGTTCGGCGCCAGCTT10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCTCGGGCTCGTCGATTTGTTGGGGA10.390625No Hit
ACGCCCAAGCAGTTCAACCGCAAGTGACTGTCTCTTATACACATCTCCGA10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCGTGGGCTCGAAGATTTCGTTGGGG10.390625No Hit
CTGTAAAGATAAATGGGCCCTCTAAAGAGTATGGAGCTGGGATTGACTCT10.390625No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGATATTCCGATCGTGACCTTCGT10.390625No Hit
GATGAGTCCGCGTCTAACATGAACCCTTTATTTCATGATACGTGGCATTT10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCATAATGTGCAAACAGCCCGCCTAA10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCCTCGTGGGCTCGAAGATTTCGTTG10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCATAGTGCAAATGCAGCCCGCATAA10.390625No Hit
TACCCTTACGCTGTTCCTGCTTACGCTTTACCTCGTAGTTTGCGATTCTT10.390625No Hit
ACACCCAAGCAGATCTACAACCGCATGCAGCACGTCTATGCCGACCAGCA10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCTCGAAGATTTCGTTGGTGTCTCTG10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCTCGAAGATTTCGTTGTGGACTCTG10.390625No Hit
GATGAGTCAGCGTCGAACATACACCATTTATTGCATGATACGTGGCATTT10.390625No Hit
ACACCCAAGCAGATCTACAACGACCCGGCCAACCTGTTCGTGGCCAGCTT10.390625No Hit
CTGTAAAGATAAATGGGCCATCTAAAGAGGATGGAGTTGGGAGTGAATCG10.390625No Hit
TACCCTTACGCTGTTCCTGCTTACGCTGTGCTCTTAGATTTCGGTGGGGC10.390625No Hit
TACCCTTACGATGTTCCTGCTTACGCTCGAGGATTTCGTTTTGGACTCTT10.390625No Hit
CTGTAAAGATAAATGGGTCATCTAATCTTGTTGACAAAGCTGATCCTTCT10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCGTGGGCGCGAAGATTTCGTTGGGG10.390625No Hit
ACACCCAAGCAGATTTACACCGATCCTGCCAACCTGTTCGGCGCCCGCTT10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCTGGGCTCGAAGATTTCGTTGGGGA10.390625No Hit
TACCCTTACGATGTTCCTGATTACGGTCTGTGGGCTCGAAGCTCTCGCTG10.390625No Hit
ACACCCAAGCAGATTTACACCGATCCTGCCAACCTGTTCGTCGCCAGCTT10.390625No Hit
CGGTTCGTCCGCTTCTGCGATGCGTTCGAGATCCCGATCGTGACGTTCGT10.390625No Hit
ACACCCAAGCAGATCTACGAGTCGTGGAAAATTTAATCTGGCTGTGGTCC10.390625No Hit
CTGTAAAGATAAATGGGTCATCTAATCTTGTTGACAAAGCTGAACCCTTC10.390625No Hit
GATGAGCCAGCGTCGAACATGCAACATTTATTGCATGATACGAGGCATTT10.390625No Hit
CTGCAAAGATAAATGGGCCATCTAAAGAGTATGGAGCTGGGATTGACTCG10.390625No Hit
TACCCTTCGATGTTCCCGATTACGGGTTTGTGTGCCGAAAGCCCGGCTGT10.390625No Hit
GAGGCGTCCGCGTCTAACATGCACCCTTTATTGCCTGATACGTGTCAGTT10.390625No Hit
GATGCGTCCGCGTCTAACATGAACCCTCTATTTCCTGATACGTGTCATTT10.390625No Hit
GATGAGTCCGCGTCGAACATGCACCCTTTATTTCATGATACGTGGCATTT10.390625No Hit
ACGCCCAAGCAGATTTACACCGATCCTGCCAACCTGTTCGTCGCCAGCTT10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCTGCGCTCGAAGATTTCGTTGGGTA10.390625No Hit
ACGCCCAAGCAGATCTACAATACGTTGACTGCAAGTGTCTGTCTCTTATA10.390625No Hit
TACCCTTACGCTGTTCCTGATTACGCTCTACGATTTAGTTTGGGACTCTT10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCTTCTGTGTCTCGAAGGATTCGTTG10.390625No Hit
TACCCTTACGATGTTCCTGATTACACTCGTAGATTTCGTTGTCTCCTCTG10.390625No Hit
GATGAGTCAGCGTAGAACATGCAACATTTATTGCATGATACGTGGCATTC10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCTGTGCGCGAAAAGTTCGCTGGGGG10.390625No Hit
TACCCTTACGATGTTCCTGATTACGCGCGAACACTTCGTTGTCGACGGTG10.390625No Hit
ACACCCAAGCAGATCTACACCGATCCGGCCATCCTGTTCTTCGTCAGTTT10.390625No Hit

[FAIL]Adapter Content

Adapter graph