FastQCFastQC Report
Tue 7 Nov 2023
000000000-L65MN_l01_n01_LowSpecHamPathoPool3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-L65MN_l01_n01_LowSpecHamPathoPool3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences171
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT6437.42690058479532No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG3520.46783625730994No Hit
GATGAGTCAGCGTCGAACATGCAACATCTATTGCATGATACGTGGCATTT52.923976608187134No Hit
TACCCTTACGATGTTCCTGATTACGCTCGAAGATTTCGTTGGGGACTCTG42.3391812865497075No Hit
GATGAGTCAGCGTAGAACATGCAACATTTATTGCATGATACGTGGCATTT21.1695906432748537No Hit
GATGAGTCAGCGTCGAACATGCATCATTTATTGCATGATACGTGGCATTT21.1695906432748537No Hit
CGGTTCGTGCGCTTCTGCGATGCGTTCGAGATTCCGATCGTCACCTTCGT10.5847953216374269No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTCACTCG10.5847953216374269No Hit
GATGCGTCCGCGTCTAACATGTACGCTTTATGACGTGATACGGGTCAGTT10.5847953216374269No Hit
CTGTAAAGATAAACGGGCCATCTAAAGAGTATGGAGCTGGGATTGACTCG10.5847953216374269No Hit
TACCCTTACGATGTTCCTGATTACGCTTGGGTCGCAGATTTCGTGGGGAT10.5847953216374269No Hit
GATGCGTCCGCGTCTAACATGCACCCTTTATTGCATGATACGTGTCATTT10.5847953216374269No Hit
ACACCCAAACAGATCTACAACCGCATGCAGCACGTCTATGCCGACCAGCA10.5847953216374269No Hit
GATGCGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.5847953216374269No Hit
GATGAGTCAGCGTCGCGGCGTACTTTATTTACGGCCAGAAACTCGACCTG10.5847953216374269No Hit
CTGTCAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCA10.5847953216374269No Hit
TACCCTTACGATGTTCCTGATTACGCATAAGAGTTTGCCAGCCCGCCTAA10.5847953216374269No Hit
CTGTAAAGATAAATGGGTCATCTAAAGTGTATGACACTGGGATTGACTCC10.5847953216374269No Hit
CTGTAAAGATAAATGGGTCATCTAAACAGGATGGAGCTGGGATTGACTCG10.5847953216374269No Hit
ACGCCCAAGCAGATTTTCAACGACCCGGCCAATCTGTTCGTGGCCAGCTT10.5847953216374269No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGCTTGACTCG10.5847953216374269No Hit
GATGCGTCCGCGTCTAACATGAACCCTTGATTTCCTGATAGGTGTCATTG10.5847953216374269No Hit
AAGAAAAGAGAAAGGGGGAAGAGAAAGAGAAGGAAGCTTGGATTGACCCG10.5847953216374269No Hit
TACCCTTACGATGTTCCTGATTACGCGGCTCGTGGGCTCGTAGCTTTCGT10.5847953216374269No Hit
TACCCTTACGCTGTTCCTGATTACGGTCTCTGAGCTAGAATCTTTCGTTT10.5847953216374269No Hit
TACCCTTACGATGTTCCTGATATCGTCTAGACAGACGATTCGTGTAAAAT10.5847953216374269No Hit
TACCCTTACGATGTTCCTGATTACGCGTGGGCTCGAAGATTTCGTTGGGG10.5847953216374269No Hit
CTGTAAAGATACATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG10.5847953216374269No Hit
GTTGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.5847953216374269No Hit
TACCCTTACGATGTTCCTGATTACGGGCCGGGTCTCGAAGATTTCGTTCT10.5847953216374269No Hit
TACCCTTACGATGTTCCTGATTACGGTCCGGGGCTCGCAGATTTCGTTGG10.5847953216374269No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTC10.5847953216374269No Hit
GATGCGTCCGCGTCTAACATGTACCCTTTATGTCCTGATACGTGTCATTT10.5847953216374269No Hit
ATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTTC10.5847953216374269No Hit
CTGTAACGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG10.5847953216374269No Hit
GATGAGTCAGCGTCGAATATGCAACATTTATTGCATGATACGTGGCATTT10.5847953216374269No Hit
ACGCCCAAGCAGATCTACAACCGCATGCAGAACGTCTATGCCGACCAGCA10.5847953216374269No Hit
GATGCGTCCGCGTCTAACATGCACCATTTATTGCATGATACGTGGCATTT10.5847953216374269No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGATATCCCGATCGTGACGTTCGT10.5847953216374269No Hit
ACGCCCAAGCAGATCTACCACAGCCCGGTTGAGCCGCAAGTGACTGTCTC10.5847953216374269No Hit
TACCCTTACGATGTTCCTGATTACGCGAGGCGCGTAGATTTAGTTGGGGG10.5847953216374269No Hit
TACCCTTACGATGTTCCTGATTACGCTCTACGATTTCGTTTGGGACTCTG10.5847953216374269No Hit
CTGTAAAGATAAACGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG10.5847953216374269No Hit
GATGAGTCAGCGTCTGGACGAAGGCGAGTGGCTTGCCATTGCCGTCGCCC10.5847953216374269No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCAGGGATTGACTCG10.5847953216374269No Hit
GAGGAGTCAGCGTCGAACATGCAACCTTTATTGCATGATACGTGGCATTT10.5847953216374269No Hit
GATGAGTCCGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.5847953216374269No Hit
GATGCGTCAGCGTCTAACATGCACCCTTTATTGCATGATACGTGGCATTT10.5847953216374269No Hit
GATGCGTCCGCGTCTAACATGCACCCTTTATTTCATGATACGTGTCATTT10.5847953216374269No Hit
GATGAGTCCGCGTCTAACATGCACCCTTTATTGCCTGATACGTGTCATTT10.5847953216374269No Hit
TACCCTTACGATGTTCCTGATTACGCTCTGCGCTTTGGTTTGGGATGGGT10.5847953216374269No Hit
GATGCGTCCGCGTCTAACATGAACCCTTTATCTCCTGATACGTGTCATTT10.5847953216374269No Hit
GACCCTTACGATGTTCCTGATTACGCCGGTGTGGGCTAGATGTTTTTGTT10.5847953216374269No Hit
GATGAGTCATCGTCGAACATGCAACATCTATTGCATGATACGTGGCATTT10.5847953216374269No Hit
TACCCTTACGATGTTCCTGATTACGCGTCCGGGGGCTCGAAGATTTCGTT10.5847953216374269No Hit
ACACCCAAGCAGATCTACAACCGCATGCAGAACGTCTATTCCGACAAGCA10.5847953216374269No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTAGCATTT10.5847953216374269No Hit
TACCCTTACGATGTTCCTGATTACGCATAATCTCCAAACTTTCCGCCTAA10.5847953216374269No Hit
GATGAGTCAGCGTCGGACATGCAACATTTATTGCATGATACGTGGCATTT10.5847953216374269No Hit
TACCCTTACGATGTTCCTGATTACGCTCTACGATTTCGTTTGGGACTCTT10.5847953216374269No Hit
GATGCGTCCGCGTCTAACATGCACCCTCTATTGCATGATACGTGGCATTT10.5847953216374269No Hit
GATGCGTCCGCGTCTCGGCGTACTTTACTTCCTGCCAGAAACTCTCCCTT10.5847953216374269No Hit
TACCCTTACGATGTTCCTGATTACGCTGGGCGCGAAGATTTCGTTGGGGA10.5847953216374269No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCGTGATACGTGGCATTT10.5847953216374269No Hit
GACGCGTCCGCGTCTAACATGTACCCTTTATTTCATGATACGTGGCCTTT10.5847953216374269No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)