FastQCFastQC Report
Tue 7 Nov 2023
000000000-L65MN_l01_n01_LowSpecHamPathoPool1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-L65MN_l01_n01_LowSpecHamPathoPool1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences145
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT5739.310344827586206No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG1711.724137931034482No Hit
GATGAGTCAGCGTCGAACATGCAACATTTAGTGCATGATACGTGGCATTT21.3793103448275863No Hit
GATGAGTCAGCGTCGAACATGCAACCTTTATTGCATGATACGTGGCATTT21.3793103448275863No Hit
GATGCGTCCGCGTCTAACATGCACCCTTTATTTCATGATACGTGTCATTT21.3793103448275863No Hit
ACGCCCAAGCAGATCTACACCGATCCGGCCAACCTGTTCGTCGCCAGTTT21.3793103448275863No Hit
TACCCTTACGATGTTCCTGATTACGCTCCAAGAATTTGTTTGGGACTCTT10.6896551724137931No Hit
TACCCTTACGATGTTCCTGATTACGCGCTCAGGGCTCGAAGATTTCGTTG10.6896551724137931No Hit
TACCCTTACGATGTTCCTGATTACGCTCGACGATTTCGTTTGGGACTCTT10.6896551724137931No Hit
ACGCCCAAGCAGATTTACGGCAACCTGAGTAGTTCGGTTGAGCCGCCAGT10.6896551724137931No Hit
TACCCTTACGATGTTCCTGATTACGCATAATTCAGTGCCAGCCCTCCTAA10.6896551724137931No Hit
GATGCGTCCGCGTCTAACATGCACCCTTTATTGCATGATACGTGTCATTT10.6896551724137931No Hit
GATGAGTCAGCGTCGAAGCAGGCTGGAATCGATCAAGAACTGTCTGGACA10.6896551724137931No Hit
GATGAGTCAGCGTCGCACATGCAACATTTATTGCATGATACGTGGCATTT10.6896551724137931No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGAGATTCCGATCGTGACGTTCGT10.6896551724137931No Hit
GAGGCGACCGCGTCTAACATGCACCCTTTATCTCCTGATGCGTGTAATTT10.6896551724137931No Hit
TACCCTTACGATGTTCCTGATTACGGTGGGATCGAAGATTTCGTTGGGGA10.6896551724137931No Hit
ACGCCCAAGCAGATTTACAAAAACAGGCACTCTGTTGATTCAAACTTACA10.6896551724137931No Hit
ACACCCAAGCAGATTTACGAGTCGTGGTAAATTTAATCTGGCTGTGGTCC10.6896551724137931No Hit
GATGAGTCAGCGTCGAACATGCAACATATATTGCATGATACGTGGCATTT10.6896551724137931No Hit
ACACCCAAGCAGATTTACAAAAACAGGCACTCTGTTGATTCAAACTTACA10.6896551724137931No Hit
ACTCCCAAGCAGATCTACGCGAGATCCTCTGCCAGAAATCCGCGTGACTC10.6896551724137931No Hit
CTGTAAAGCTAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG10.6896551724137931No Hit
ACGCCCAACCGCAAGTGACTGTCTCTTATAAATCTCCGAGCCCACGAGAC10.6896551724137931No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGAGATTCCGATCGTCACCTTCGT10.6896551724137931No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGACATCCCGATCGTGACTTTCGT10.6896551724137931No Hit
ACGCCCAAGCAGATCTACAACGACCCTGCCCATCTGTTCTTGGCCAGCTT10.6896551724137931No Hit
TACCCTTACGCTGTTCCTGATTACGGTCAGTGTTCTCGAATCTGTCGGTT10.6896551724137931No Hit
CTGAAAGATAAATGGGTCATCTACAGAGTATGGAGCTGGGATTGACTCGG10.6896551724137931No Hit
TACCCTTACGATGTTCCTGATTACGCATAATGTGCAAACAGCCCGCCTAA10.6896551724137931No Hit
CGGTTCGTGCGCTTCTGCGATGCGTTCGAAATTCCGATCGTCACCTTCGT10.6896551724137931No Hit
ACACCCAAGCAGATCTACACCGATCCGGCCAACCTGTTCGTCGCCAGCTT10.6896551724137931No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGCCTCG10.6896551724137931No Hit
GATGAGTCCGCGTCGAACATGCAACCTTTATTGCATGATACGTGGCATTT10.6896551724137931No Hit
GATGAGTCAGCGTCGAATAGCCGTTCACTATGTTGCGGTTACTCACTGTC10.6896551724137931No Hit
GATGAGTCAGCGTCGAACATGCAACATCTATTGCATGATACGTGGCATTT10.6896551724137931No Hit
TACCCTTACGATGTTCCTGATTACGCTTCGGTTTCTAGAATGAGTCGGTT10.6896551724137931No Hit
GATGAGTCAGCGTCGAATAGCCGTTCACTAAGTTGCGGTTACTCACTGTC10.6896551724137931No Hit
TACCCTTACGATGTTCCTGATTACGCTCGAAGATTTCGTTGGGGACTCTG10.6896551724137931No Hit
TACCCTTACGATGTTCCTGATTACGCGTCTATGGGCTCTAAGTTTTCGTG10.6896551724137931No Hit
GATGCGTCCGCGTCTAACATGGACCCTTTATGTCCTGATACGAGTCAGTT10.6896551724137931No Hit
TACCCTTACGATGTTCCTGATTACGCTCCTGTCTCGACGATTTCGTTGTG10.6896551724137931No Hit
GATGAGTCAGCATCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.6896551724137931No Hit
TACCCTTACGATGTTCCTGATTACGCTGGGCTCGAAGATTTCGTTGGGGA10.6896551724137931No Hit
TACCCTTACGATGTTCCTGATTACGCCTCGAAAATTTCTTTGGGACTCCT10.6896551724137931No Hit
TACCCTTACGATGTTCCTGATTACGCGTCTGTTGCTCGAAGCCTGCCTTT10.6896551724137931No Hit
TACCCTTACGATGTTCCTGATTACGCATCGTGCCTCGAATATCCCGTGGA10.6896551724137931No Hit
ACACCCAAGCAGATTTACAACGATCCGGCCAACCTCTTCGTAGCCAGCTT10.6896551724137931No Hit
CTGTACAGATAAATGGGTCATCTAAAGAGTATTGATCTGGGCTTGACTCG10.6896551724137931No Hit
GATGTGTCCGCGTCTAACATGCAACATTTATTGCATGATACGTGGCATTT10.6896551724137931No Hit
GAGGCGTCCGCGTCTAACATGCACACTCTATTTCCTGATACGTGTCATTT10.6896551724137931No Hit
ACACCCAAGCAGATCTACAACGATCCCGCCAACCTGTTCGTCGCCAGCTT10.6896551724137931No Hit
GATGAGTCAGCGTCGATAACGTATGCACCGCATCGCTGTCAGCGCCCATG10.6896551724137931No Hit
GATGAGTCAGCGTCTCTACATCGGCTGCCACGCTTTTGATCTGCTCAGAC10.6896551724137931No Hit
GATGAGTCAGCGTCGAACAGTGGCACTTGCGCAGCCGCAGGCGGGCCGAT10.6896551724137931No Hit
CGGTTCGTCCGCTTCTGCGACGCGTTCGAGATCCCGATCGTGACGTTCGT10.6896551724137931No Hit
GATGCGTCCGCGTCTAACATGCACCCTTTATTTCCTGATACGTGGCATTT10.6896551724137931No Hit
GATGAGTCAGCGTCGAACATACAACATTTATTGCATGATACATGGCATTT10.6896551724137931No Hit
GATGAGTCATCGTCGAACATGCAACATCTATTGCATGATACGTGGCATTT10.6896551724137931No Hit
ACACCCAAGCAGATTTACCGCAGTCAGTTGAACCGCAAGAGACTGTCTCT10.6896551724137931No Hit
TACCCTTACGATGTTCCTGATTACGCCTCGAAGATTTCGTTGGGGACTCT10.6896551724137931No Hit
GATGAGTCATCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.6896551724137931No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGAGATCCCGATCGTGACGTTCGT10.6896551724137931No Hit
TACCCTTACGATGTTCCTGATTACGCTCTACGATTTCGTTTGGGACTCTT10.6896551724137931No Hit
GATGAGTCCGCGTCTAACATGCACCCTTTATTGCATGATACGTGGCATTT10.6896551724137931No Hit
GATGAGTCGGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.6896551724137931No Hit
ACACCCAAGCAGATTTACACCCACGTGCTGGACGAAAAACTGCGCACGCT10.6896551724137931No Hit
TACCCTTACGATGTTCCTGATTACGCTGTGCTCTAAGATTTCGTTGGGGA10.6896551724137931No Hit
GATGCGTCCGCGTCTAACATGCACCCTTTATTGCCTGATACGTGGCATTT10.6896551724137931No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)