FastQCFastQC Report
Tue 7 Nov 2023
000000000-L65MN_l01_n01_AllHamPathoPool4.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-L65MN_l01_n01_AllHamPathoPool4.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences174
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT9152.29885057471264No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG169.195402298850574No Hit
GATGAGTCAGCGTCGAACATGCACCATTTATTGCATGATACGTGGCATTT31.7241379310344827No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCCTTT21.1494252873563218No Hit
GATGAGTCAGCGTCGAACATGCAACATCTATTGCATGATACGTGGCATTT21.1494252873563218No Hit
GATGAGTCAGCGTCGAACATGCAACCTTTATTGCATGATACGTGGCATTT21.1494252873563218No Hit
GATGAGTCCGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT21.1494252873563218No Hit
GATGAGTCAGCGTCTAACATGCAACATTTATTGCATGATACGTGGCATTT21.1494252873563218No Hit
TACCCTTACGATGTTCCTGATTACGCATAGTGCCAATGCAGCCCGCCTAA10.5747126436781609No Hit
GATGAGTCAGCGTAGAACATGCAACATTTATTGCATGATACGTGGCATTT10.5747126436781609No Hit
GATGCGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.5747126436781609No Hit
GATGAGTCAGCGTCTAACATGAACCCTTTATTTCATGATACGTGTCATTT10.5747126436781609No Hit
TACCCTTACGATGTTCCTGATTACGGTGGGCTCGAAGATTTCGTTGGGGA10.5747126436781609No Hit
GATGCGTCCGCGTCTATCATGCACCCTTTATTGCATGATACGGGTCATTT10.5747126436781609No Hit
TACCCTTACGATGTTCCTGATTACGCGTCTGTGGCTCGAATCTTTCGGTT10.5747126436781609No Hit
GATGAGTCAGCGTCGAACATGCAACATCTATTGCACGATACGTGGCATTT10.5747126436781609No Hit
TACCCTTACGATGTTCCTGATTACGCTCTTCGAGTTCGTTTAGACATGCG10.5747126436781609No Hit
AATGAGTCAGCATCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.5747126436781609No Hit
GAAGAGGGCATCGTCCCCGGCGGCGGCACCGCGCTGCTGCGCGCCAAGAA10.5747126436781609No Hit
TACCCTTACGATGTTCCTGATTACGCCGAGTGCGCTAACATTCCGTTGGA10.5747126436781609No Hit
TACCCTTACGATGTTCCTGATTACGCATAATTCAGTGCCAGCCCGCCTAA10.5747126436781609No Hit
GTTGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.5747126436781609No Hit
GATGCGTCCGCGTCTAACATGCACCCTTTATTGCCTGATACGTGTCATTT10.5747126436781609No Hit
TACCCTTACGATGTTCCTGATTACGGTTTGTGGGCTCGAATCTTTAGTTT10.5747126436781609No Hit
GATGAGTCAGCGTCGAACATGCAACATTTACTGCATGATACGTGGCATTT10.5747126436781609No Hit
GAGGAGGGAATCGTTCCCGGCGGCGGCACCGCCCTCCTCCGCGCCCGCGA10.5747126436781609No Hit
GATGAGTCAGCGTCGAACATCCAACATTTATTGCATGATACGTGGCATTT10.5747126436781609No Hit
CTATAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG10.5747126436781609No Hit
TACCCTTACGATGTTCCTGATTACGCATAGCGCAAATGCAACCCGCCGAA10.5747126436781609No Hit
CTGTAAAGATAAATGGGCCATCTAAAGAGTATGGAGCTGGGATTGACTCG10.5747126436781609No Hit
TACCCTTACGATGTTCCTGATTACGCTCAACGGTTTAGTTGGGGACCCTT10.5747126436781609No Hit
TACCCTTACGATGTTCCTGATTACGCATGAATCAGTCCCAGCCCGCCCAG10.5747126436781609No Hit
TACCCTTACGATGTTCCTGATTACGCTCCGTGTCCTCGAATATGTCGTTG10.5747126436781609No Hit
TACCCTTACGATGTTCCTGATTACGCTTAAGGGTGTGCTAGCACACGTTA10.5747126436781609No Hit
GACGCGTCCGCGTCTAACATGAACCCTTTATTGCATGATACGTGGCATTT10.5747126436781609No Hit
GATGAGTCAGCGTCGAACATGCACCATTTATTGCATGATACGCGGCATTT10.5747126436781609No Hit
TACCCTTACGATGTTCCTGATTACGCTGGGATCGAAGATTTCGTTGGGGA10.5747126436781609No Hit
TACCCTTACGATGTTCCTGATTACGCGTGAGGCCTTTCAGGCCAAGCTTG10.5747126436781609No Hit
GATGAGTCAGCGTCGAACATTCAACATTTATTGCATGATACGTGGCCTTT10.5747126436781609No Hit
TACCCTTACGATGTTCCTGATTACGCTCGAAGAGTTCGTTGGGGACTCTG10.5747126436781609No Hit
TACCCTTACGATGTTCCTGATTACGCTCAGTGTGCTCGAAGCGAGCGTTT10.5747126436781609No Hit
GATGAGTCAGCGTCTAACATGCAACATTTATTGCATGATACGTGTCATTT10.5747126436781609No Hit
GATGAGTCAGCGTCGAACATGCAACATTTAATGCATGATACGTGGCATTT10.5747126436781609No Hit
TACCCTTACGATGTTCCTGATTACGCTGGGCTCGAAGATTTCGTCGGGGA10.5747126436781609No Hit
TACCCTTACGATGTTCCTGATTACGCTCGAAGATTTCGGTGGGGACTCTG10.5747126436781609No Hit
GAGGAGGGAATCGTCCCCGGTGGCGGTACGGCGCTGCTGTACGCGACCAA10.5747126436781609No Hit
GATGAGTCAGCGTCGAACATGCAACATCTATTGCATGGTACGTGGCATTT10.5747126436781609No Hit
TACCCTTACGATGTTCCTGATTACGCCTTGGCTCGAAGATTTCGTTGGGG10.5747126436781609No Hit
TACCCTTACGATGTTCCTGATTACGCATAATTGAGTGCGAGCCCGACTCA10.5747126436781609No Hit
GACGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.5747126436781609No Hit
GATGAGTCAGCGTCGAACATGAACATTTATTGCATGATACGTGGCATTTC10.5747126436781609No Hit
ACCCTTACGATGTTCCTGATTACGCATAATGTGCAAACAGCCCGCCTAAT10.5747126436781609No Hit
CGGTTCGTGCGCTTCTGCGACGCGTTCGAGATCCCGATCGTGACGTTCGT10.5747126436781609No Hit
TACCCTTACGATGTTCCTGATTACGCTTGAGGATTTGCCTGGGCACTCTA10.5747126436781609No Hit
TACCCTTACGATGTTCCTATTACGCCGTAGGCTCGAAGATTTCGTTGGGT10.5747126436781609No Hit
GAGGCGTCCGCGTCTAACATGTACCCTTTATTGCCTGATACGTGTCATTT10.5747126436781609No Hit
GATGAGTCCGCGTCTAACATGCACCCTTTATTGCATGATACGTGGCATTT10.5747126436781609No Hit
GATGAGTCAGCGTCGATCATGCAACATTTATTGCATGATACGTGGCATTT10.5747126436781609No Hit
GATGCGTCAGCGTCTAACATGCACCCTTTATTTCCTGATACGTGGCATTT10.5747126436781609No Hit
GATGAGTCGGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.5747126436781609No Hit
TACCCTTACGATGTTCCTGATTACGGTCGAAGATTTCGTTGGGGACTCTG10.5747126436781609No Hit
TACCCTTACGATGTTCCTGATTACGCTCCTCTGGGCTCGAAGATTTCGTT10.5747126436781609No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)