FastQCFastQC Report
Tue 7 Nov 2023
000000000-L65MN_l01_n01_AllHamPathoPool3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-L65MN_l01_n01_AllHamPathoPool3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences288
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT14148.95833333333333No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG3813.194444444444445No Hit
GATGAGTCAGCGTCGAACATGCAACATCTATTGCATGATACGTGGCATTT51.7361111111111112No Hit
GATGAGTCGGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT41.3888888888888888No Hit
GATGAGTCAGCGTCGAACATGCACCATTTATTGCATGATACGTGGCATTT31.0416666666666665No Hit
CTGTAAAGGTAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG20.6944444444444444No Hit
CTGTAAAGCTAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG20.6944444444444444No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTC20.6944444444444444No Hit
CTGTAAAGATAAATGGGCCATCTAAAGAGTATGGAGCTGGGATTGACTCG20.6944444444444444No Hit
GATGAGTCAGCGTCGAACATGCAACCTTTATTGCATGATACGTGGCATTT20.6944444444444444No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGAATTT20.6944444444444444No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATCGCATGATACGTGGCATTT20.6944444444444444No Hit
GATGAGTCATCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT20.6944444444444444No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGTATGATACGTGGCATTT10.3472222222222222No Hit
GATGAATCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.3472222222222222No Hit
GATGCGTCAGCGTCGAACATGCACCCTTTATTGCATGATACGTGGCATTT10.3472222222222222No Hit
GATGAGTCAGCGTCGCGGCGTACTTTATTTACGGCCAGAAACTCGACCTG10.3472222222222222No Hit
GATGAGTCAGCGTCGCACATGCAACATTTATTGCATGATACGTGGCATTT10.3472222222222222No Hit
GATGAGTCAGCGTCGAACATGCACCATTTATTGCATGATTCGTGGCATTT10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCTGAGTTCGCAGATTTCGCTGGGAC10.3472222222222222No Hit
GATGAGTCAGCATCGAACATACAACATTTATTGCATGATACGTGGCATTT10.3472222222222222No Hit
GATGAGTCAGCGTCTAACATGCACCCTTTATTTCCTGATACGTGTCATTT10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCTCTACGATTTCGTTGGGGGCTCTT10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTAGTTTACAAAGCTGAAGCCTTCTGTCTC10.3472222222222222No Hit
GATGAGTCAACGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCATAATGATTAAGTTGGGGACTTTA10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCTTCTCTTGATCGTATCTTTCGTTT10.3472222222222222No Hit
GATGAGTCAGCCGAACATCGCGTCGGGCAAACTCACACCACGCGATTTCG10.3472222222222222No Hit
CTGTAAAGATAAATTGGTCATCTCAAGAGTATGGAGCTGGGATTTACTCG10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCTGGGATCGAAGATTGCGTTGGGGG10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCATTAGGATTTGGTTGCGGGCCTTA10.3472222222222222No Hit
GATGCGTCCGCGTTTAACATGCACCCTTTATTGCATGATACGTGTCATTT10.3472222222222222No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCCTTT10.3472222222222222No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGCTTGACTCG10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCATACTTCAGTTCTTGCACGCCTAC10.3472222222222222No Hit
GATGCGTCCGCGTCGAACATGCACCATTTATTGCATGATACGTGGCATTT10.3472222222222222No Hit
GATGCGTCCGCGTCTAACATGCACCCTTTATTGCATGATACGTGGCATTT10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCATAATTCAGTGCCAGCCCGCCTAA10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCGTGGGCTCGAAGATTTCGTTGGGG10.3472222222222222No Hit
GATGGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTTC10.3472222222222222No Hit
GATGAGTCATCGTCGAACATGCAACATTTATTGCATGAGACGTGGCATTT10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCATAGGTGCGAAGATGTCGTTGTGG10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCGCGGAGGGCTCGAAGATTTCGTTG10.3472222222222222No Hit
GACGCGGCCAATGTTCCCTATTGCTTCGCCCATCTTGACTACACCTTGAG10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCATTATGCTCAAACATTCCGCCGGG10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCGTCTGGTGCACACAGCCTGCCTAA10.3472222222222222No Hit
GATGAGTCCGCGTCGAACATGCACCCTCTATTGCATGATACGTGGCATTT10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCAGTCTCTAAGATTTCGTCTCTACA10.3472222222222222No Hit
GATGCGTCAGCGTCTCGGCGTACTTTATTTACGTCCAGAAACTCGACCTG10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCATAATGTGCAAACAGCCCGCCTAA10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGGTCTGTGGGCTCGAAGATTTCGTTG10.3472222222222222No Hit
ATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTTC10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGAGCTGGCGCGAAGAGGTCGGTGGGG10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTAGTTGACAAAACTGCACCCTGCTGTCTC10.3472222222222222No Hit
CTGTAACGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG10.3472222222222222No Hit
GATGAGTCAGCGTCAGACATGCAACATTTATTGCATGATACGTGGCATTT10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCCTCGGAGCTTTCGTTGGGGACTCT10.3472222222222222No Hit
GAAGCGTCCGCGTCTAACATGCACCCTTTATTTCATGATACGCGGCATTT10.3472222222222222No Hit
GATGAGTCAGCGTCGAAGCAGGCTGGAATCGATCGAGAACTGGCTGGACA10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCTCGAAGATTTCGTTGGGGACTCTG10.3472222222222222No Hit
GAAGAGGGCATCGTCCCCGGTGGTGGTACGGCGTTGCTGTACGCGACCAA10.3472222222222222No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACATGGCATTT10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTAGTTGACATAGCTGAACCCTTCTGTCTC10.3472222222222222No Hit
GATGAGTCAGCGTCGAACATGCACCCTTTATTGCATGATACGTGGCATTT10.3472222222222222No Hit
GGATGAGTCAGCGTCGAACATGCAACATTTCTTGCATGATACGTGGCATT10.3472222222222222No Hit
GAAGAGGAAGAAGAGAAAGATTAAGAGGGGAGGGAAGATTCGTTGGGGAC10.3472222222222222No Hit
GATGAGACAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCATAATTCCGTGCCAGCCCGCCTAA10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCTCTAAGATTTCGTTGGGACTCTGT10.3472222222222222No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGCGCTGGGATTGACTCG10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCGAGAAGGTTGCGTTGGTGACTCTG10.3472222222222222No Hit
GAGGAAGGAATCGTCCCCGGCGGCGGTGTGGCTCTCATCCGCGCTCAGAA10.3472222222222222No Hit
GATGCGTCAGCGTCTAACATGCACCCTTTATTTCATGATACGTGGCATTT10.3472222222222222No Hit
GATGAGTCCGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.3472222222222222No Hit
GATGAGTCAGAGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.3472222222222222No Hit
GATGAGTCAGCGTCTAACATGCCACATTTATTTCATGATACGTGGCAATA10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCTCGTATGTTTCTTTGGTTTCCGTG10.3472222222222222No Hit
GATGCGTCCGCGTCTAACATGCACCCTTTATTTCATGATACGTGGCATTT10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCCTCGGAGATTTCGTTGGGACTCTG10.3472222222222222No Hit
GATGAGTCAGCGTCGAACACTGGAATGAAGAAGCAGGCTATGTGTGGATG10.3472222222222222No Hit
GATGAGTCAGCGTCTAACATGCACCCTCTATTTCATGATACGTGTCATTT10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCTGTGCCCTGAGATTTCGGTGGGGA10.3472222222222222No Hit
TACCCTTACGATGTTCCTGCTTACGCTGTGGCTCCAGATTTCGGTGGGGA10.3472222222222222No Hit
GATGGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATT10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGTATACTCGAATGTTTCCTTGCGTAA10.3472222222222222No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCGTCT10.3472222222222222No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATAATACGTGGCATTT10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTAGGCGTAAATTCCGAGGCGATGTTTTCG10.3472222222222222No Hit
CTGTAAAGGTAAATGGGTCATCTAAAGAGTATGGCGCTGGTATTGACTCG10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCTCTAAGATTTCGTTTGGGACTCTT10.3472222222222222No Hit
GATGCGTCAGCGTCTAACATGCACCCTCTATTTCATGATACGTGGCATTT10.3472222222222222No Hit
GATGAGTCAGCGTCGAACATGCGACATTTATTGCATGATACGTGGCATTT10.3472222222222222No Hit
CTGTAAAGTTAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG10.3472222222222222No Hit
TACCCTTACGATGTTCCTGATTACGCATGATTTGCTAGCAGCCCGCGTTA10.3472222222222222No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)