FastQCFastQC Report
Tue 7 Nov 2023
000000000-L65MN_l01_n01_AllHamPathoPool1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-L65MN_l01_n01_AllHamPathoPool1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT3833.6283185840708No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG97.964601769911504No Hit
GATGAGTCCGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT32.6548672566371683No Hit
TACCCTTACGATGTTCCTGATTACGCTGGGCTCGCGGATTTTTCGGTGGA10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCGTCGGCTCGAAGATTTCGTTGGGG10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCCGTGGGCTCGAAGATTTCGTTGGG10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCTAGAAGATTTCGTTGGGGACTCTG10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTAAGTCCAACGAGATTGGTCGGGGAACTT10.8849557522123894No Hit
GATGAGTCAGCGTCGTACATGCAACATTTATTGCATGATACGTGGCATTT10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTCGGGGCTCGAAGATTTCGTTGGTGACTC10.8849557522123894No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATAAGTGGCATTT10.8849557522123894No Hit
TACCCTTACGACGTTCCTGATTACGCTTGGGCTCGAAGATTTCGTTGGGT10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCTGCGGCCCGTGACTTTCGATGAAG10.8849557522123894No Hit
GATGCGTCCGCGTCGAACATGCACCCTTTATTTCATGATACGTGTCATTT10.8849557522123894No Hit
TACCCTTACTATGTTCCTGATTACGCTGCTATGCGATCGTTCTTGACTCT10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCATAAGAGTTTGCCAGCCCGCCTAA10.8849557522123894No Hit
GATGCGTCCGCGTCGAACATGCACCCTTTATTGCATGATACGGGGCATTT10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCGGCGTGCTCTCTAGGATCTCTGGG10.8849557522123894No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGAGGCATTT10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCCTCTTGCGCTCGAAGATTTCGTTG10.8849557522123894No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGAAACGTGGCATTT10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCGTATCGTGGGCTTGGAGGTCTGGT10.8849557522123894No Hit
TACCCTTACGATGTTCCTGTTTACACTGCTCACCCAGTTTGCGTTGGGGA10.8849557522123894No Hit
GTTGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.8849557522123894No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTGGCATCT10.8849557522123894No Hit
GATGAGTCAACGTCGAACATGCAACATTTATTGCATGATACGTAGCATTT10.8849557522123894No Hit
TACCCTTACGATGTTCCTGTTGACAAAGCTGAACCCTTCTGTCTCTTATA10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCTTGAGTTCCTTGCATTCCGTCGGA10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCTCGAAGATTTCGTTGGGGACTCTT10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCTCTAGGTCTTAGATTTGGACGGTG10.8849557522123894No Hit
GATGAGTCAGCGTCGAACATGCAACATCTATTGCATGATACGTGGCATTT10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCGGGGGCCCGGAGATTTCGTTTGGG10.8849557522123894No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTACATGATACGTGGCATTT10.8849557522123894No Hit
CTGTAAAGATAAATGGGCCATCTAAAGAGTATGGAGCTGGGATTGACTCG10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCGTCGTGGCCCGGAGATTTTCGTTG10.8849557522123894No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGGATGGAGCAGGGGTAGACTCG10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCGGCGGCCGCTCAGTGCAGAGGAAG10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCTCGAAGATTTCGTTGGGGACTCTG10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCGGGGGGCTAGATTATTTTGTTGGG10.8849557522123894No Hit
GATGAGTCAGCGTCGAACATGCAATCACGATCACTCAGGATGACCAGCTG10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCTCTGGATCGAAGATTTCGTTGGGT10.8849557522123894No Hit
GATGAGTCAGCGTCGAACATGCAACATTTAATGCATGATACGTGGAATTT10.8849557522123894No Hit
ATGAGTCAGCGTCGAACATGCAACATTCATTGCATGATACGTGGCATTTC10.8849557522123894No Hit
GATGAGTCAGCGTAGAACATGCAACATTTATTGCATGATACGTGGCCTTT10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGGTTCGTGGCTCGAAGATTTCGTTGG10.8849557522123894No Hit
CTGTAAAGATAAATGGGTCATCTAAAGTGTATGGAGCTGGGATTGACTCG10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCCGTGGGCACAAATATTACCCTGGC10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCGCGACATTTCGTTTTGACTCTGCG10.8849557522123894No Hit
GAAGCCGTCATCGTCCCCGGTGGTGGGTCCGCCCTCATCCTTGCCCGTGA10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCTCGTATATTTCGTTGGTGTCTCTG10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCATCGTGTGCCTAAAAGCCGGCGTT10.8849557522123894No Hit
TACCCTTCCGATGTTCCTGATTACGCTCTTTGAGTTCGATGATTTCTTTG10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCTGGCTCAATTAGTTCGTTTGGGAC10.8849557522123894No Hit
GATGCGTCCGCGTCTAACATGCACCCTTTATTTCATGATACGTGTCAGTT10.8849557522123894No Hit
CTGTACAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG10.8849557522123894No Hit
GATGAGTCAGCGTCGAACATGCAACATTTATTGCATGATACGTAGCATTT10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCGTCGTGGCTCGAAAATTGCGTGGG10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCATGACGCGCAAACATCCCGCCTAA10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCTGTGCTCTTAGATTTCGATGGGGA10.8849557522123894No Hit
GATGAGTCATCGTCGAACATGCAACATTTATTGCATGATACGTGGCATTT10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCTCTAAGATTTAGTTTGGGACTCTT10.8849557522123894No Hit
TACCCTTACGCTGTTCCTGCTTACGCCTCGTGTACATACATCCCTCCTAC10.8849557522123894No Hit
GCTGAGTCACCGTCGCACATGCAACATTTATTGCATGCTCCGTGGCATTT10.8849557522123894No Hit
GATGAGTCAGCGTCGAACATGCAACATTTGTTGCATGATACGTGGCATTT10.8849557522123894No Hit
TATCATTAAGCTGTGCCTCATCAACATCTACTGTATAGTTTGGGGCTTTT10.8849557522123894No Hit
TACCCTTACGATGTTCCTGATTACGCTTGATTTGTTCGCTGCGCACCTTG10.8849557522123894No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)