FastQCFastQC Report
Tue 5 Sep 2023
000000000-L42GL_l01.1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-L42GL_l01.1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14000836
Sequences flagged as poor quality0
Sequence length301
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG739931852.849115581383856No Hit
GATCCTCCACATATCGAACCCTCAATGAATGGCCGGGAAAGGTACACGCG13852999.894402019993663No Hit
CTGTAAAGATAAATGGGTCATCTATAGAGTATGGAGCTGGGATTGACTCG2922742.0875467722070313No Hit
ATCCTCCACATATCGAACCCTCAATGAATGGCCGGGAAAGGTACACGCGT1745951.247032677191562No Hit
GATCCTCCACATATCGAACCCTCATTGAATGGCCGGGAAAGGTACACGCG441260.3151668943197392No Hit
GATCCTCCACAAAGCTGAACCCTTCTGTCTCTTATACACATCTCCGAGCC165580.11826436649925762No Hit
CTGTAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCGG160240.1144503085387187No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)