[2023-04-17 02:56:11,122] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2023-04-17 02:56:11,122] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2023-04-17 02:56:11,122] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-04-17 02:56:11,124] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2023-04-17 02:56:11,124] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2023-04-17 02:56:11,124] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/000000000-KWF5G/1 [2023-04-17 02:56:11,704] multiqc [WARNING] MultiQC Version v1.14 now available! [2023-04-17 02:56:11,704] multiqc [INFO ] This is MultiQC v1.9 [2023-04-17 02:56:11,704] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/000000000-KWF5G/1 [2023-04-17 02:56:11,704] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/000000000-KWF5G/1 [2023-04-17 02:56:11,704] multiqc [INFO ] Template : default [2023-04-17 02:56:11,704] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2023-04-17 02:56:11,704] multiqc [INFO ] Searching : /scratch/gencore/logs/html/000000000-KWF5G/1 [2023-04-17 02:56:11,704] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2023-04-17 02:56:11,704] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-32425540/tmprjwimxb1 [2023-04-17 02:56:11,862] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n01_ELP4D3_fastqc.html [2023-04-17 02:56:11,865] multiqc [DEBUG ] File ignored by longranger/invocation because it 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[2023-04-17 02:57:14,660] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n01_ELP4F5_fastqc.html [2023-04-17 02:57:14,661] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n01_ELP4F5_fastqc.html [2023-04-17 02:57:14,661] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n01_ELP4F5_fastqc.html [2023-04-17 02:57:14,661] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n01_ELP4F5_fastqc.html [2023-04-17 02:57:14,662] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n01_ELP4F5_fastqc.html [2023-04-17 02:57:14,662] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 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02:57:14,910] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n02_ELP4E8_fastqc.html [2023-04-17 02:57:14,910] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n02_ELP4E8_fastqc.html [2023-04-17 02:57:14,910] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n02_ELP4E8_fastqc.html [2023-04-17 02:57:14,910] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n02_ELP4E8_fastqc.html [2023-04-17 02:57:14,910] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n02_ELP4E8_fastqc.html [2023-04-17 02:57:14,999] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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02:57:15,240] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n02_ELP4F8_fastqc.html [2023-04-17 02:57:15,240] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n02_ELP4F8_fastqc.html [2023-04-17 02:57:15,240] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n02_ELP4F8_fastqc.html [2023-04-17 02:57:15,240] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n02_ELP4F8_fastqc.html [2023-04-17 02:57:15,240] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n02_ELP4F8_fastqc.html [2023-04-17 02:57:15,340] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n01_ELP2E4_fastqc.html [2023-04-17 02:57:15,342] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n01_ELP2E4_fastqc.html [2023-04-17 02:57:15,342] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n01_ELP2E4_fastqc.html [2023-04-17 02:57:15,342] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n01_ELP2E4_fastqc.html [2023-04-17 02:57:15,342] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n01_ELP2E4_fastqc.html [2023-04-17 02:57:15,342] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n01_ELP2E4_fastqc.html [2023-04-17 02:57:15,342] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it 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multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n02_ELP4B10_fastqc.html [2023-04-17 02:57:15,518] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n02_ELP4B10_fastqc.html [2023-04-17 02:57:15,518] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n02_ELP4B10_fastqc.html [2023-04-17 02:57:15,601] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n02_ELP3D12_fastqc.html [2023-04-17 02:57:15,603] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n02_ELP3D12_fastqc.html [2023-04-17 02:57:15,603] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 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because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n02_ELP1D1_fastqc.html [2023-04-17 02:57:15,695] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n02_ELP1D1_fastqc.html [2023-04-17 02:57:15,695] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n02_ELP1D1_fastqc.html [2023-04-17 02:57:15,695] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n02_ELP1D1_fastqc.html [2023-04-17 02:57:15,695] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n02_ELP1D1_fastqc.html [2023-04-17 02:57:15,695] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n02_ELP1D1_fastqc.html [2023-04-17 02:57:15,780] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n01_ELP4E11_fastqc.html [2023-04-17 02:57:15,782] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n01_ELP4E11_fastqc.html [2023-04-17 02:57:15,782] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n01_ELP4E11_fastqc.html [2023-04-17 02:57:15,782] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n01_ELP4E11_fastqc.html [2023-04-17 02:57:15,782] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n01_ELP4E11_fastqc.html [2023-04-17 02:57:15,782] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n01_ELP4E11_fastqc.html [2023-04-17 02:57:15,782] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: 000000000-KWF5G_l01_n01_ELP4E11_fastqc.html [2023-04-17 02:57:16,127] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2023-04-17 02:57:16,128] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2023-04-17 02:57:16,289] multiqc.modules.custom_content.custom_content [INFO ] demux_report-1: Found 345 samples (table) [2023-04-17 02:57:16,298] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2023-04-17 02:57:16,300] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2023-04-17 02:57:16,304] multiqc [DEBUG ] No samples found: conpair [2023-04-17 02:57:16,309] multiqc [DEBUG ] No samples found: peddy [2023-04-17 02:57:16,321] multiqc [DEBUG ] No samples found: somalier [2023-04-17 02:57:16,326] multiqc [DEBUG ] No samples found: methylQA [2023-04-17 02:57:16,335] multiqc [DEBUG ] No samples found: mosdepth [2023-04-17 02:57:16,339] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-04-17 02:57:16,343] multiqc [DEBUG ] No samples found: qualimap [2023-04-17 02:57:16,347] multiqc [DEBUG ] No samples found: preseq [2023-04-17 02:57:16,352] multiqc [DEBUG ] No samples found: quast [2023-04-17 02:57:16,357] multiqc [DEBUG ] No samples found: qorts [2023-04-17 02:57:16,362] multiqc [DEBUG ] No samples found: rna_seqc [2023-04-17 02:57:16,367] multiqc [DEBUG ] No samples found: rockhopper [2023-04-17 02:57:16,372] multiqc [DEBUG ] No samples found: rsem [2023-04-17 02:57:16,384] multiqc [DEBUG ] No samples found: rseqc [2023-04-17 02:57:16,388] multiqc [DEBUG ] No samples found: busco [2023-04-17 02:57:16,393] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-04-17 02:57:16,397] multiqc [DEBUG ] No samples found: disambiguate [2023-04-17 02:57:16,402] multiqc [DEBUG ] No samples found: supernova [2023-04-17 02:57:16,414] multiqc [DEBUG ] No samples found: deeptools [2023-04-17 02:57:16,419] multiqc [DEBUG ] No samples found: sargasso [2023-04-17 02:57:16,423] multiqc [DEBUG ] No samples found: verifybamid [2023-04-17 02:57:16,428] multiqc [DEBUG ] No samples found: mirtrace [2023-04-17 02:57:16,432] multiqc [DEBUG ] No samples found: happy [2023-04-17 02:57:16,438] multiqc [DEBUG ] No samples found: mirtop [2023-04-17 02:57:16,444] multiqc [DEBUG ] No samples found: homer [2023-04-17 02:57:16,449] multiqc [DEBUG ] No samples found: macs2 [2023-04-17 02:57:16,453] multiqc [DEBUG ] No samples found: theta2 [2023-04-17 02:57:16,458] multiqc [DEBUG ] No samples found: snpeff [2023-04-17 02:57:16,465] multiqc [DEBUG ] No samples found: gatk [2023-04-17 02:57:16,469] multiqc [DEBUG ] No samples found: htseq [2023-04-17 02:57:16,474] multiqc [DEBUG ] No samples found: bcftools [2023-04-17 02:57:16,479] multiqc [DEBUG ] No samples found: featureCounts [2023-04-17 02:57:16,485] multiqc [DEBUG ] No samples found: fgbio [2023-04-17 02:57:16,498] multiqc [DEBUG ] No samples found: dragen [2023-04-17 02:57:16,503] multiqc [DEBUG ] No samples found: dedup [2023-04-17 02:57:16,508] multiqc [DEBUG ] No samples found: damageprofiler [2023-04-17 02:57:16,529] multiqc [DEBUG ] No samples found: biobambam2 [2023-04-17 02:57:16,533] multiqc [DEBUG ] No samples found: mtnucratio [2023-04-17 02:57:16,535] multiqc [DEBUG ] No samples found: picard [2023-04-17 02:57:16,540] multiqc [DEBUG ] No samples found: prokka [2023-04-17 02:57:16,545] multiqc [DEBUG ] No samples found: samblaster [2023-04-17 02:57:16,553] multiqc [DEBUG ] No samples found: samtools [2023-04-17 02:57:16,558] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-04-17 02:57:16,562] multiqc [DEBUG ] No samples found: bamtools [2023-04-17 02:57:16,567] multiqc [DEBUG ] No samples found: jellyfish [2023-04-17 02:57:16,575] multiqc [DEBUG ] No samples found: vcftools [2023-04-17 02:57:16,579] multiqc [DEBUG ] No samples found: longranger [2023-04-17 02:57:16,584] multiqc [DEBUG ] No samples found: stacks [2023-04-17 02:57:16,589] multiqc [DEBUG ] No samples found: varscan2 [2023-04-17 02:57:16,602] multiqc [DEBUG ] No samples found: bbmap [2023-04-17 02:57:16,606] multiqc [DEBUG ] No samples found: bismark [2023-04-17 02:57:16,611] multiqc [DEBUG ] No samples found: biscuit [2023-04-17 02:57:16,616] multiqc [DEBUG ] No samples found: hicexplorer [2023-04-17 02:57:16,620] multiqc [DEBUG ] No samples found: hicup [2023-04-17 02:57:16,625] multiqc [DEBUG ] No samples found: hicpro [2023-04-17 02:57:16,629] multiqc [DEBUG ] No samples found: salmon [2023-04-17 02:57:16,634] multiqc [DEBUG ] No samples found: kallisto [2023-04-17 02:57:16,639] multiqc [DEBUG ] No samples found: slamdunk [2023-04-17 02:57:16,644] multiqc [DEBUG ] No samples found: star [2023-04-17 02:57:16,648] multiqc [DEBUG ] No samples found: hisat2 [2023-04-17 02:57:16,653] multiqc [DEBUG ] No samples found: tophat [2023-04-17 02:57:16,657] multiqc [DEBUG ] No samples found: bowtie2 [2023-04-17 02:57:16,662] multiqc [DEBUG ] No samples found: bowtie1 [2023-04-17 02:57:16,666] multiqc [DEBUG ] No samples found: snpsplit [2023-04-17 02:57:16,670] multiqc [DEBUG ] No samples found: kat [2023-04-17 02:57:16,674] multiqc [DEBUG ] No samples found: leehom [2023-04-17 02:57:16,679] multiqc [DEBUG ] No samples found: adapterRemoval [2023-04-17 02:57:16,684] multiqc [DEBUG ] No samples found: clipandmerge [2023-04-17 02:57:16,688] multiqc [DEBUG ] No samples found: cutadapt [2023-04-17 02:57:16,693] multiqc [DEBUG ] No samples found: flexbar [2023-04-17 02:57:16,697] multiqc [DEBUG ] No samples found: kaiju [2023-04-17 02:57:16,702] multiqc [DEBUG ] No samples found: kraken [2023-04-17 02:57:16,707] multiqc [DEBUG ] No samples found: malt [2023-04-17 02:57:16,711] multiqc [DEBUG ] No samples found: trimmomatic [2023-04-17 02:57:16,716] multiqc [DEBUG ] No samples found: sickle [2023-04-17 02:57:16,720] multiqc [DEBUG ] No samples found: skewer [2023-04-17 02:57:16,725] multiqc [DEBUG ] No samples found: sortmerna [2023-04-17 02:57:16,729] multiqc [DEBUG ] No samples found: biobloomtools [2023-04-17 02:57:16,734] multiqc [DEBUG ] No samples found: fastq_screen [2023-04-17 02:57:16,738] multiqc [DEBUG ] No samples found: afterqc [2023-04-17 02:57:16,743] multiqc [DEBUG ] No samples found: fastp [2023-04-17 02:57:43,606] multiqc.modules.fastqc.fastqc [INFO ] Found 690 reports [2023-04-17 02:57:43,622] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-KWF5G_l01_n01_ELP2A10' [2023-04-17 02:57:43,622] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-KWF5G_l01_n02_ELP2G10' [2023-04-17 02:57:43,623] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-KWF5G_l01_n01_ELP2E10' [2023-04-17 02:57:43,623] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-KWF5G_l01_n02_ELP2H9' [2023-04-17 02:57:43,623] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-KWF5G_l01_n01_ELP3B1' [2023-04-17 02:57:43,623] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-KWF5G_l01_n02_ELP2A10' [2023-04-17 02:57:43,623] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-KWF5G_l01_n02_ELP2H10' [2023-04-17 02:57:43,623] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-KWF5G_l01_n02_ELP2D10' [2023-04-17 02:57:43,624] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-KWF5G_l01_n01_ELP2H9' [2023-04-17 02:57:43,624] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-KWF5G_l01_n01_ELP2D10' [2023-04-17 02:57:43,624] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-KWF5G_l01_n01_ELP2C10' [2023-04-17 02:57:43,624] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-KWF5G_l01_n02_ELP2E10' [2023-04-17 02:57:43,624] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-KWF5G_l01_n02_ELP2C10' [2023-04-17 02:57:43,625] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-KWF5G_l01_n02_ELP3B1' [2023-04-17 02:57:43,625] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-KWF5G_l01_n01_ELP2H10' [2023-04-17 02:57:43,670] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-KWF5G_l01_n01_ELP2F10' [2023-04-17 02:57:43,670] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-KWF5G_l01_n02_ELP2F10' [2023-04-17 02:57:43,671] multiqc.modules.fastqc.fastqc [WARNING] Sample had zero reads: '000000000-KWF5G_l01_n01_ELP2G10' [2023-04-17 02:58:36,800] multiqc [DEBUG ] No samples found: pycoqc [2023-04-17 02:58:36,805] multiqc [DEBUG ] No samples found: minionqc [2023-04-17 02:58:36,809] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-04-17 02:58:36,814] multiqc [DEBUG ] No samples found: clusterflow [2023-04-17 02:58:36,818] multiqc [DEBUG ] No samples found: bcl2fastq [2023-04-17 02:58:36,823] multiqc [DEBUG ] No samples found: interop [2023-04-17 02:58:36,828] multiqc [DEBUG ] No samples found: ivar [2023-04-17 02:58:36,832] multiqc [DEBUG ] No samples found: flash [2023-04-17 02:58:36,837] multiqc [DEBUG ] No samples found: seqyclean [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found. [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Lane 1 Demultiplexing Report'. [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane 1 Demultiplexing Report'. [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Lane 1 Demultiplexing Report'. [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Lane 1 Demultiplexing Report'. [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Lane 1 Demultiplexing Report'. [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Lane 1 Demultiplexing Report'. [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Lane 1 Demultiplexing Report'. [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Lane Statistics'. [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane Statistics'. [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Lane Statistics'. [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Lane Statistics'. [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Lane Statistics'. [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Lane Statistics'. [2023-04-17 02:58:36,837] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Lane Statistics'. [2023-04-17 02:58:36,838] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2023-04-17 02:58:36,838] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2023-04-17 02:58:36,838] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2023-04-17 02:58:36,838] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2023-04-17 02:58:36,838] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2023-04-17 02:58:36,838] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2023-04-17 02:58:36,838] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2023-04-17 02:58:36,842] multiqc.plots.table [DEBUG ] Plotting beeswarm instead of table, 690 samples [2023-04-17 02:58:36,844] multiqc [INFO ] Compressing plot data [2023-04-17 02:58:37,194] multiqc [INFO ] Report : multiqc_report.html [2023-04-17 02:58:37,194] multiqc [INFO ] Data : multiqc_data [2023-04-17 02:58:37,194] multiqc [DEBUG ] Moving data file from '/state/partition1/job-32425540/tmprjwimxb1/multiqc_data' to '/scratch/gencore/logs/html/000000000-KWF5G/1/multiqc_data' [2023-04-17 02:58:37,390] multiqc [INFO ] MultiQC complete