FastQCFastQC Report
Wed 21 Dec 2022
000000000-KDH3G_l01_n01_Presort.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-KDH3G_l01_n01_Presort.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9046513
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCGGAGACGGACGTC418420.4625207524711455No Hit
GATCGATAACGCATTTCTTGTGGAAAGGACGAAACACCGGAGACGGACGT346000.3824678083146512No Hit
CGATCATGATCGTCTTGTGGAAAGGACGAAACACCGGAGACGGACGTCTC331100.3659973737947428No Hit
TCGATCGTTACCATCTTGTGGAAAGGACGAAACACCGGAGACGGACGTCT309250.3418444211598436No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)