[2022-03-16 04:23:00,534] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2022-03-16 04:23:00,534] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2022-03-16 04:23:00,534] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2022-03-16 04:23:00,535] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2022-03-16 04:23:00,535] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2022-03-16 04:23:00,535] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/000000000-KB2N6/1 [2022-03-16 04:23:01,259] multiqc [WARNING] MultiQC Version v1.12 now available! [2022-03-16 04:23:01,260] multiqc [INFO ] This is MultiQC v1.9 [2022-03-16 04:23:01,260] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/000000000-KB2N6/1 [2022-03-16 04:23:01,260] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/000000000-KB2N6/1 [2022-03-16 04:23:01,260] multiqc [INFO ] Template : default [2022-03-16 04:23:01,260] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2022-03-16 04:23:01,260] multiqc [INFO ] Searching : /scratch/gencore/logs/html/000000000-KB2N6/1 [2022-03-16 04:23:01,260] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2022-03-16 04:23:01,260] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-16074230/tmpfskllcjv [2022-03-16 04:23:01,389] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-KB2N6_l01.3_fastqc.html [2022-03-16 04:23:01,391] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-KB2N6_l01.3_fastqc.html [2022-03-16 04:23:01,435] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-KB2N6_l01.4_fastqc.html [2022-03-16 04:23:01,437] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-KB2N6_l01.4_fastqc.html [2022-03-16 04:23:01,480] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-KB2N6_l01.1_fastqc.html [2022-03-16 04:23:01,482] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-KB2N6_l01.1_fastqc.html [2022-03-16 04:23:01,527] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-KB2N6_l01.2_fastqc.html [2022-03-16 04:23:01,529] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-KB2N6_l01.2_fastqc.html [2022-03-16 04:23:01,884] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2022-03-16 04:23:01,885] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2022-03-16 04:23:01,889] multiqc.modules.custom_content.custom_content [WARNING] Not able to parse custom data in undetermined_barcodes_mqc.txt [2022-03-16 04:23:01,891] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2022-03-16 04:23:01,897] multiqc [DEBUG ] No samples found: conpair [2022-03-16 04:23:01,903] multiqc [DEBUG ] No samples found: peddy [2022-03-16 04:23:01,909] multiqc [DEBUG ] No samples found: somalier [2022-03-16 04:23:01,915] multiqc [DEBUG ] No samples found: methylQA [2022-03-16 04:23:01,925] multiqc [DEBUG ] No samples found: mosdepth [2022-03-16 04:23:01,930] multiqc [DEBUG ] No samples found: phantompeakqualtools [2022-03-16 04:23:01,934] multiqc [DEBUG ] No samples found: qualimap [2022-03-16 04:23:01,939] multiqc [DEBUG ] No samples found: preseq [2022-03-16 04:23:01,944] multiqc [DEBUG ] No samples found: quast [2022-03-16 04:23:01,949] multiqc [DEBUG ] No samples found: qorts [2022-03-16 04:23:01,954] multiqc [DEBUG ] No samples found: rna_seqc [2022-03-16 04:23:01,961] multiqc [DEBUG ] No samples found: rockhopper [2022-03-16 04:23:01,966] multiqc [DEBUG ] No samples found: rsem [2022-03-16 04:23:01,978] multiqc [DEBUG ] No samples found: rseqc [2022-03-16 04:23:01,983] multiqc [DEBUG ] No samples found: busco [2022-03-16 04:23:01,988] multiqc [DEBUG ] No samples found: goleft_indexcov [2022-03-16 04:23:01,992] multiqc [DEBUG ] No samples found: disambiguate [2022-03-16 04:23:01,997] multiqc [DEBUG ] No samples found: supernova [2022-03-16 04:23:02,011] multiqc [DEBUG ] No samples found: deeptools [2022-03-16 04:23:02,015] multiqc [DEBUG ] No samples found: sargasso [2022-03-16 04:23:02,020] multiqc [DEBUG ] No samples found: verifybamid [2022-03-16 04:23:02,025] multiqc [DEBUG ] No samples found: mirtrace [2022-03-16 04:23:02,029] multiqc [DEBUG ] No samples found: happy [2022-03-16 04:23:02,034] multiqc [DEBUG ] No samples found: mirtop [2022-03-16 04:23:02,040] multiqc [DEBUG ] No samples found: homer [2022-03-16 04:23:02,044] multiqc [DEBUG ] No samples found: macs2 [2022-03-16 04:23:02,049] multiqc [DEBUG ] No samples found: theta2 [2022-03-16 04:23:02,054] multiqc [DEBUG ] No samples found: snpeff [2022-03-16 04:23:02,060] multiqc [DEBUG ] No samples found: gatk [2022-03-16 04:23:02,064] multiqc [DEBUG ] No samples found: htseq [2022-03-16 04:23:02,070] multiqc [DEBUG ] No samples found: bcftools [2022-03-16 04:23:02,075] multiqc [DEBUG ] No samples found: featureCounts [2022-03-16 04:23:02,081] multiqc [DEBUG ] No samples found: fgbio [2022-03-16 04:23:02,094] multiqc [DEBUG ] No samples found: dragen [2022-03-16 04:23:02,100] multiqc [DEBUG ] No samples found: dedup [2022-03-16 04:23:02,105] multiqc [DEBUG ] No samples found: damageprofiler [2022-03-16 04:23:02,127] multiqc [DEBUG ] No samples found: biobambam2 [2022-03-16 04:23:02,132] multiqc [DEBUG ] No samples found: mtnucratio [2022-03-16 04:23:02,135] multiqc [DEBUG ] No samples found: picard [2022-03-16 04:23:02,139] multiqc [DEBUG ] No samples found: prokka [2022-03-16 04:23:02,143] multiqc [DEBUG ] No samples found: samblaster [2022-03-16 04:23:02,152] multiqc [DEBUG ] No samples found: samtools [2022-03-16 04:23:02,157] multiqc [DEBUG ] No samples found: sexdeterrmine [2022-03-16 04:23:02,163] multiqc [DEBUG ] No samples found: bamtools [2022-03-16 04:23:02,169] multiqc [DEBUG ] No samples found: jellyfish [2022-03-16 04:23:02,178] multiqc [DEBUG ] No samples found: vcftools [2022-03-16 04:23:02,184] multiqc [DEBUG ] No samples found: longranger [2022-03-16 04:23:02,190] multiqc [DEBUG ] No samples found: stacks [2022-03-16 04:23:02,197] multiqc [DEBUG ] No samples found: varscan2 [2022-03-16 04:23:02,213] multiqc [DEBUG ] No samples found: bbmap [2022-03-16 04:23:02,219] multiqc [DEBUG ] No samples found: bismark [2022-03-16 04:23:02,225] multiqc [DEBUG ] No samples found: biscuit [2022-03-16 04:23:02,230] multiqc [DEBUG ] No samples found: hicexplorer [2022-03-16 04:23:02,236] multiqc [DEBUG ] No samples found: hicup [2022-03-16 04:23:02,241] multiqc [DEBUG ] No samples found: hicpro [2022-03-16 04:23:02,248] multiqc [DEBUG ] No samples found: salmon [2022-03-16 04:23:02,253] multiqc [DEBUG ] No samples found: kallisto [2022-03-16 04:23:02,260] multiqc [DEBUG ] No samples found: slamdunk [2022-03-16 04:23:02,265] multiqc [DEBUG ] No samples found: star [2022-03-16 04:23:02,272] multiqc [DEBUG ] No samples found: hisat2 [2022-03-16 04:23:02,277] multiqc [DEBUG ] No samples found: tophat [2022-03-16 04:23:02,282] multiqc [DEBUG ] No samples found: bowtie2 [2022-03-16 04:23:02,287] multiqc [DEBUG ] No samples found: bowtie1 [2022-03-16 04:23:02,292] multiqc [DEBUG ] No samples found: snpsplit [2022-03-16 04:23:02,296] multiqc [DEBUG ] No samples found: kat [2022-03-16 04:23:02,301] multiqc [DEBUG ] No samples found: leehom [2022-03-16 04:23:02,306] multiqc [DEBUG ] No samples found: adapterRemoval [2022-03-16 04:23:02,311] multiqc [DEBUG ] No samples found: clipandmerge [2022-03-16 04:23:02,316] multiqc [DEBUG ] No samples found: cutadapt [2022-03-16 04:23:02,320] multiqc [DEBUG ] No samples found: flexbar [2022-03-16 04:23:02,325] multiqc [DEBUG ] No samples found: kaiju [2022-03-16 04:23:02,329] multiqc [DEBUG ] No samples found: kraken [2022-03-16 04:23:02,334] multiqc [DEBUG ] No samples found: malt [2022-03-16 04:23:02,338] multiqc [DEBUG ] No samples found: trimmomatic [2022-03-16 04:23:02,343] multiqc [DEBUG ] No samples found: sickle [2022-03-16 04:23:02,347] multiqc [DEBUG ] No samples found: skewer [2022-03-16 04:23:02,352] multiqc [DEBUG ] No samples found: sortmerna [2022-03-16 04:23:02,356] multiqc [DEBUG ] No samples found: biobloomtools [2022-03-16 04:23:02,361] multiqc [DEBUG ] No samples found: fastq_screen [2022-03-16 04:23:02,365] multiqc [DEBUG ] No samples found: afterqc [2022-03-16 04:23:02,370] multiqc [DEBUG ] No samples found: fastp [2022-03-16 04:23:02,394] multiqc.modules.fastqc.fastqc [INFO ] Found 4 reports [2022-03-16 04:23:02,440] multiqc [DEBUG ] No samples found: pycoqc [2022-03-16 04:23:02,445] multiqc [DEBUG ] No samples found: minionqc [2022-03-16 04:23:02,450] multiqc [DEBUG ] No samples found: multivcfanalyzer [2022-03-16 04:23:02,457] multiqc [DEBUG ] No samples found: clusterflow [2022-03-16 04:23:02,461] multiqc [DEBUG ] No samples found: bcl2fastq [2022-03-16 04:23:02,467] multiqc [DEBUG ] No samples found: interop [2022-03-16 04:23:02,471] multiqc [DEBUG ] No samples found: ivar [2022-03-16 04:23:02,477] multiqc [DEBUG ] No samples found: flash [2022-03-16 04:23:02,481] multiqc [DEBUG ] No samples found: seqyclean [2022-03-16 04:23:02,481] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found. [2022-03-16 04:23:02,481] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2022-03-16 04:23:02,481] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2022-03-16 04:23:02,487] multiqc [INFO ] Compressing plot data [2022-03-16 04:23:02,552] multiqc [INFO ] Report : multiqc_report.html [2022-03-16 04:23:02,552] multiqc [INFO ] Data : multiqc_data [2022-03-16 04:23:02,552] multiqc [DEBUG ] Moving data file from '/state/partition1/job-16074230/tmpfskllcjv/multiqc_data' to '/scratch/gencore/logs/html/000000000-KB2N6/1/multiqc_data' [2022-03-16 04:23:07,607] multiqc [INFO ] MultiQC complete