[2021-12-23 05:39:46,208] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2021-12-23 05:39:46,208] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2021-12-23 05:39:46,208] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-12-23 05:39:46,209] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2021-12-23 05:39:46,209] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2021-12-23 05:39:46,210] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/000000000-K4LKV/1 [2021-12-23 05:39:47,489] multiqc [WARNING] MultiQC Version v1.11 now available! [2021-12-23 05:39:47,489] multiqc [INFO ] This is MultiQC v1.9 [2021-12-23 05:39:47,489] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/000000000-K4LKV/1 [2021-12-23 05:39:47,489] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/000000000-K4LKV/1 [2021-12-23 05:39:47,489] multiqc [INFO ] Template : default [2021-12-23 05:39:47,489] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2021-12-23 05:39:47,489] multiqc [INFO ] Searching : /scratch/gencore/logs/html/000000000-K4LKV/1 [2021-12-23 05:39:47,490] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2021-12-23 05:39:47,490] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-13270705/tmp802mwfuk [2021-12-23 05:39:47,580] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix08_rep2_fastqc.html [2021-12-23 05:39:47,583] multiqc [DEBUG ] File ignored by longranger/invocation 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05:39:56,588] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix03_rep1_fastqc.html [2021-12-23 05:39:56,632] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix43_rep2_fastqc.html [2021-12-23 05:39:56,633] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix43_rep2_fastqc.html [2021-12-23 05:39:56,676] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix11_rep2_fastqc.html [2021-12-23 05:39:56,678] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix11_rep2_fastqc.html [2021-12-23 05:39:56,721] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix12_rep1_fastqc.html [2021-12-23 05:39:56,723] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix12_rep1_fastqc.html [2021-12-23 05:39:56,766] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix10_rep1_fastqc.html [2021-12-23 05:39:56,767] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix10_rep1_fastqc.html [2021-12-23 05:39:56,811] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix01_rep1_fastqc.html [2021-12-23 05:39:56,813] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix01_rep1_fastqc.html [2021-12-23 05:39:56,857] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix25_rep1_fastqc.html [2021-12-23 05:39:56,859] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix25_rep1_fastqc.html [2021-12-23 05:39:56,903] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix35_rep1_fastqc.html [2021-12-23 05:39:56,905] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix35_rep1_fastqc.html [2021-12-23 05:39:56,948] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix43_rep1_fastqc.html [2021-12-23 05:39:56,950] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix43_rep1_fastqc.html [2021-12-23 05:39:56,993] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix15_rep2_fastqc.html [2021-12-23 05:39:56,995] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix15_rep2_fastqc.html [2021-12-23 05:39:57,038] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix01_rep2_fastqc.html [2021-12-23 05:39:57,039] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix01_rep2_fastqc.html [2021-12-23 05:39:57,082] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix02_rep1_fastqc.html [2021-12-23 05:39:57,084] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix02_rep1_fastqc.html [2021-12-23 05:39:57,128] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix16_rep1_fastqc.html [2021-12-23 05:39:57,129] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix16_rep1_fastqc.html [2021-12-23 05:39:57,172] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix34_rep2_fastqc.html [2021-12-23 05:39:57,174] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix34_rep2_fastqc.html [2021-12-23 05:39:57,218] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix36_rep2_fastqc.html [2021-12-23 05:39:57,220] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix36_rep2_fastqc.html [2021-12-23 05:39:57,264] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix42_rep1_fastqc.html [2021-12-23 05:39:57,266] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix42_rep1_fastqc.html [2021-12-23 05:39:57,309] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Control07_rep1_fastqc.html [2021-12-23 05:39:57,310] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Control07_rep1_fastqc.html [2021-12-23 05:39:57,355] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix02_rep2_fastqc.html [2021-12-23 05:39:57,357] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix02_rep2_fastqc.html [2021-12-23 05:39:57,401] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix41_rep2_fastqc.html [2021-12-23 05:39:57,403] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix41_rep2_fastqc.html [2021-12-23 05:39:57,449] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix34_rep1_fastqc.html [2021-12-23 05:39:57,450] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix34_rep1_fastqc.html [2021-12-23 05:39:57,494] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix04_rep1_fastqc.html [2021-12-23 05:39:57,496] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix04_rep1_fastqc.html [2021-12-23 05:39:57,539] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix03_rep1_fastqc.html [2021-12-23 05:39:57,541] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix03_rep1_fastqc.html [2021-12-23 05:39:57,584] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix44_rep1_fastqc.html [2021-12-23 05:39:57,585] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix44_rep1_fastqc.html [2021-12-23 05:39:57,629] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix02_rep1_fastqc.html [2021-12-23 05:39:57,631] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix02_rep1_fastqc.html [2021-12-23 05:39:57,675] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix12_rep2_fastqc.html [2021-12-23 05:39:57,677] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix12_rep2_fastqc.html [2021-12-23 05:39:57,720] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix35_rep2_fastqc.html [2021-12-23 05:39:57,722] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix35_rep2_fastqc.html [2021-12-23 05:39:57,766] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix24_rep2_fastqc.html [2021-12-23 05:39:57,767] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix24_rep2_fastqc.html [2021-12-23 05:39:57,814] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix20_rep2_fastqc.html [2021-12-23 05:39:57,816] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix20_rep2_fastqc.html [2021-12-23 05:39:57,860] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix33_rep2_fastqc.html [2021-12-23 05:39:57,862] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix33_rep2_fastqc.html [2021-12-23 05:39:57,904] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix26_rep2_fastqc.html [2021-12-23 05:39:57,906] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix26_rep2_fastqc.html [2021-12-23 05:39:57,948] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix36_rep2_fastqc.html [2021-12-23 05:39:57,950] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix36_rep2_fastqc.html [2021-12-23 05:39:57,993] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix10_rep1_fastqc.html [2021-12-23 05:39:57,995] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix10_rep1_fastqc.html [2021-12-23 05:39:58,037] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix37_rep1_fastqc.html [2021-12-23 05:39:58,039] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix37_rep1_fastqc.html [2021-12-23 05:39:58,081] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix40_rep2_fastqc.html [2021-12-23 05:39:58,083] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix40_rep2_fastqc.html [2021-12-23 05:39:58,128] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix29_rep2_fastqc.html [2021-12-23 05:39:58,130] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix29_rep2_fastqc.html [2021-12-23 05:39:58,174] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix41_rep1_fastqc.html [2021-12-23 05:39:58,176] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix41_rep1_fastqc.html [2021-12-23 05:39:58,219] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix35_rep1_fastqc.html [2021-12-23 05:39:58,220] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n02_SynCon_Mix35_rep1_fastqc.html [2021-12-23 05:39:58,263] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix44_rep2_fastqc.html [2021-12-23 05:39:58,265] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4LKV_l01_n01_SynCon_Mix44_rep2_fastqc.html [2021-12-23 05:39:58,564] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2021-12-23 05:39:58,564] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2021-12-23 05:39:58,572] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2021-12-23 05:39:58,581] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2021-12-23 05:39:58,625] multiqc.modules.custom_content.custom_content [INFO ] demux_report-1: Found 97 samples (table) [2021-12-23 05:39:58,628] multiqc [DEBUG ] No samples found: conpair [2021-12-23 05:39:58,631] multiqc [DEBUG ] No samples found: peddy [2021-12-23 05:39:58,634] multiqc [DEBUG ] No samples found: somalier [2021-12-23 05:39:58,636] multiqc [DEBUG ] No samples found: methylQA [2021-12-23 05:39:58,640] multiqc [DEBUG ] No samples found: mosdepth [2021-12-23 05:39:58,642] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-12-23 05:39:58,645] multiqc [DEBUG ] No samples found: qualimap [2021-12-23 05:39:58,648] multiqc [DEBUG ] No samples found: preseq [2021-12-23 05:39:58,650] multiqc [DEBUG ] No samples found: quast [2021-12-23 05:39:58,653] multiqc [DEBUG ] No samples found: qorts [2021-12-23 05:39:58,656] multiqc [DEBUG ] No samples found: rna_seqc [2021-12-23 05:39:58,658] multiqc [DEBUG ] No samples found: rockhopper [2021-12-23 05:39:58,661] multiqc [DEBUG ] No samples found: rsem [2021-12-23 05:39:58,666] multiqc [DEBUG ] No samples found: rseqc [2021-12-23 05:39:58,668] multiqc [DEBUG ] No samples found: busco [2021-12-23 05:39:58,671] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-12-23 05:39:58,674] multiqc [DEBUG ] No samples found: disambiguate [2021-12-23 05:39:58,676] multiqc [DEBUG ] No samples found: supernova [2021-12-23 05:39:58,681] multiqc [DEBUG ] No samples found: deeptools [2021-12-23 05:39:58,683] multiqc [DEBUG ] No samples found: sargasso [2021-12-23 05:39:58,686] multiqc [DEBUG ] No samples found: verifybamid [2021-12-23 05:39:58,689] multiqc [DEBUG ] No samples found: mirtrace [2021-12-23 05:39:58,692] multiqc [DEBUG ] No samples found: happy [2021-12-23 05:39:58,694] multiqc [DEBUG ] No samples found: mirtop [2021-12-23 05:39:58,697] multiqc [DEBUG ] No samples found: homer [2021-12-23 05:39:58,700] multiqc [DEBUG ] No samples found: macs2 [2021-12-23 05:39:58,703] multiqc [DEBUG ] No samples found: theta2 [2021-12-23 05:39:58,706] multiqc [DEBUG ] No samples found: snpeff [2021-12-23 05:39:58,709] multiqc [DEBUG ] No samples found: gatk [2021-12-23 05:39:58,711] multiqc [DEBUG ] No samples found: htseq [2021-12-23 05:39:58,714] multiqc [DEBUG ] No samples found: bcftools [2021-12-23 05:39:58,717] multiqc [DEBUG ] No samples found: featureCounts [2021-12-23 05:39:58,720] multiqc [DEBUG ] No samples found: fgbio [2021-12-23 05:39:58,725] multiqc [DEBUG ] No samples found: dragen [2021-12-23 05:39:58,728] multiqc [DEBUG ] No samples found: dedup [2021-12-23 05:39:58,730] multiqc [DEBUG ] No samples found: damageprofiler [2021-12-23 05:39:58,738] multiqc [DEBUG ] No samples found: biobambam2 [2021-12-23 05:39:58,740] multiqc [DEBUG ] No samples found: mtnucratio [2021-12-23 05:39:58,742] multiqc [DEBUG ] No samples found: picard [2021-12-23 05:39:58,745] multiqc [DEBUG ] No samples found: prokka [2021-12-23 05:39:58,748] multiqc [DEBUG ] No samples found: samblaster [2021-12-23 05:39:58,751] multiqc [DEBUG ] No samples found: samtools [2021-12-23 05:39:58,754] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-12-23 05:39:58,757] multiqc [DEBUG ] No samples found: bamtools [2021-12-23 05:39:58,759] multiqc [DEBUG ] No samples found: jellyfish [2021-12-23 05:39:58,763] multiqc [DEBUG ] No samples found: vcftools [2021-12-23 05:39:58,766] multiqc [DEBUG ] No samples found: longranger [2021-12-23 05:39:58,768] multiqc [DEBUG ] No samples found: stacks [2021-12-23 05:39:58,771] multiqc [DEBUG ] No samples found: varscan2 [2021-12-23 05:39:58,776] multiqc [DEBUG ] No samples found: bbmap [2021-12-23 05:39:58,778] multiqc [DEBUG ] No samples found: bismark [2021-12-23 05:39:58,781] multiqc [DEBUG ] No samples found: biscuit [2021-12-23 05:39:58,784] multiqc [DEBUG ] No samples found: hicexplorer [2021-12-23 05:39:58,787] multiqc [DEBUG ] No samples found: hicup [2021-12-23 05:39:58,789] multiqc [DEBUG ] No samples found: hicpro [2021-12-23 05:39:58,792] multiqc [DEBUG ] No samples found: salmon [2021-12-23 05:39:58,795] multiqc [DEBUG ] No samples found: kallisto [2021-12-23 05:39:58,798] multiqc [DEBUG ] No samples found: slamdunk [2021-12-23 05:39:58,800] multiqc [DEBUG ] No samples found: star [2021-12-23 05:39:58,803] multiqc [DEBUG ] No samples found: hisat2 [2021-12-23 05:39:58,805] multiqc [DEBUG ] No samples found: tophat [2021-12-23 05:39:58,808] multiqc [DEBUG ] No samples found: bowtie2 [2021-12-23 05:39:58,811] multiqc [DEBUG ] No samples found: bowtie1 [2021-12-23 05:39:58,813] multiqc [DEBUG ] No samples found: snpsplit [2021-12-23 05:39:58,816] multiqc [DEBUG ] No samples found: kat [2021-12-23 05:39:58,819] multiqc [DEBUG ] No samples found: leehom [2021-12-23 05:39:58,821] multiqc [DEBUG ] No samples found: adapterRemoval [2021-12-23 05:39:58,824] multiqc [DEBUG ] No samples found: clipandmerge [2021-12-23 05:39:58,827] multiqc [DEBUG ] No samples found: cutadapt [2021-12-23 05:39:58,829] multiqc [DEBUG ] No samples found: flexbar [2021-12-23 05:39:58,832] multiqc [DEBUG ] No samples found: kaiju [2021-12-23 05:39:58,835] multiqc [DEBUG ] No samples found: kraken [2021-12-23 05:39:58,837] multiqc [DEBUG ] No samples found: malt [2021-12-23 05:39:58,840] multiqc [DEBUG ] No samples found: trimmomatic [2021-12-23 05:39:58,843] multiqc [DEBUG ] No samples found: sickle [2021-12-23 05:39:58,845] multiqc [DEBUG ] No samples found: skewer [2021-12-23 05:39:58,848] multiqc [DEBUG ] No samples found: sortmerna [2021-12-23 05:39:58,851] multiqc [DEBUG ] No samples found: biobloomtools [2021-12-23 05:39:58,853] multiqc [DEBUG ] No samples found: fastq_screen [2021-12-23 05:39:58,856] multiqc [DEBUG ] No samples found: afterqc [2021-12-23 05:39:58,859] multiqc [DEBUG ] No samples found: fastp [2021-12-23 05:40:00,480] multiqc.modules.fastqc.fastqc [INFO ] Found 194 reports [2021-12-23 05:40:25,705] multiqc [DEBUG ] No samples found: pycoqc [2021-12-23 05:40:25,707] multiqc [DEBUG ] No samples found: minionqc [2021-12-23 05:40:25,710] multiqc [DEBUG ] No samples found: multivcfanalyzer [2021-12-23 05:40:25,713] multiqc [DEBUG ] No samples found: clusterflow [2021-12-23 05:40:25,716] multiqc [DEBUG ] No samples found: bcl2fastq [2021-12-23 05:40:25,719] multiqc [DEBUG ] No samples found: interop [2021-12-23 05:40:25,721] multiqc [DEBUG ] No samples found: ivar [2021-12-23 05:40:25,724] multiqc [DEBUG ] No samples found: flash [2021-12-23 05:40:25,727] multiqc [DEBUG ] No samples found: seqyclean [2021-12-23 05:40:25,727] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found. [2021-12-23 05:40:25,727] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane Statistics'. [2021-12-23 05:40:25,727] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2021-12-23 05:40:25,727] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane 1 Demultiplexing Report'. [2021-12-23 05:40:25,727] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2021-12-23 05:40:25,947] multiqc [INFO ] Compressing plot data [2021-12-23 05:40:26,018] multiqc [INFO ] Report : multiqc_report.html [2021-12-23 05:40:26,018] multiqc [INFO ] Data : multiqc_data [2021-12-23 05:40:26,018] multiqc [DEBUG ] Moving data file from '/state/partition1/job-13270705/tmp802mwfuk/multiqc_data' to '/scratch/gencore/logs/html/000000000-K4LKV/1/multiqc_data' [2021-12-23 05:40:26,123] multiqc [INFO ] MultiQC complete