[2021-11-15 21:01:54,558] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml
[2021-11-15 21:01:54,558] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml
[2021-11-15 21:01:54,558] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml
[2021-11-15 21:01:54,559] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml
[2021-11-15 21:01:54,559] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}}
[2021-11-15 21:01:54,559] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/000000000-K4JTH/1
[2021-11-15 21:01:55,835] multiqc [WARNING] MultiQC Version v1.11 now available!
[2021-11-15 21:01:55,835] multiqc [INFO ] This is MultiQC v1.9
[2021-11-15 21:01:55,835] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/000000000-K4JTH/1
[2021-11-15 21:01:55,835] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/000000000-K4JTH/1
[2021-11-15 21:01:55,835] multiqc [INFO ] Template : default
[2021-11-15 21:01:55,835] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode]
[2021-11-15 21:01:55,835] multiqc [INFO ] Searching : /scratch/gencore/logs/html/000000000-K4JTH/1
[2021-11-15 21:01:55,836] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean
[2021-11-15 21:01:55,836] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-12034693/tmpkw3nzxa2
[2021-11-15 21:01:55,940] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2021-11-15 21:01:55,942] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt
[2021-11-15 21:01:56,035] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4JTH_l01_n02_section6_fastqc.html
[2021-11-15 21:01:56,037] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4JTH_l01_n02_section6_fastqc.html
[2021-11-15 21:01:56,077] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4JTH_l01_n02_section2_fastqc.html
[2021-11-15 21:01:56,079] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4JTH_l01_n02_section2_fastqc.html
[2021-11-15 21:01:56,119] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4JTH_l01_n02_undetermined_fastqc.html
[2021-11-15 21:01:56,120] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4JTH_l01_n02_undetermined_fastqc.html
[2021-11-15 21:01:56,158] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4JTH_l01_n01_undetermined_fastqc.html
[2021-11-15 21:01:56,160] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4JTH_l01_n01_undetermined_fastqc.html
[2021-11-15 21:01:56,198] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4JTH_l01_n02_section7_fastqc.html
[2021-11-15 21:01:56,200] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4JTH_l01_n02_section7_fastqc.html
[2021-11-15 21:01:56,241] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4JTH_l01_n01_section6_fastqc.html
[2021-11-15 21:01:56,242] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4JTH_l01_n01_section6_fastqc.html
[2021-11-15 21:01:56,282] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4JTH_l01_n01_section2_fastqc.html
[2021-11-15 21:01:56,284] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4JTH_l01_n01_section2_fastqc.html
[2021-11-15 21:01:56,324] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 000000000-K4JTH_l01_n01_section7_fastqc.html
[2021-11-15 21:01:56,325] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 000000000-K4JTH_l01_n01_section7_fastqc.html
[2021-11-15 21:01:56,829] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2
[2021-11-15 21:01:56,831] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2
[2021-11-15 21:01:56,838] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table)
[2021-11-15 21:01:56,840] multiqc.modules.custom_content.custom_content [INFO ] demux_report-1: Found 4 samples (table)
[2021-11-15 21:01:56,850] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table)
[2021-11-15 21:01:56,854] multiqc [DEBUG ] No samples found: conpair
[2021-11-15 21:01:56,859] multiqc [DEBUG ] No samples found: peddy
[2021-11-15 21:01:56,864] multiqc [DEBUG ] No samples found: somalier
[2021-11-15 21:01:56,869] multiqc [DEBUG ] No samples found: methylQA
[2021-11-15 21:01:56,876] multiqc [DEBUG ] No samples found: mosdepth
[2021-11-15 21:01:56,880] multiqc [DEBUG ] No samples found: phantompeakqualtools
[2021-11-15 21:01:56,883] multiqc [DEBUG ] No samples found: qualimap
[2021-11-15 21:01:56,887] multiqc [DEBUG ] No samples found: preseq
[2021-11-15 21:01:56,892] multiqc [DEBUG ] No samples found: quast
[2021-11-15 21:01:56,896] multiqc [DEBUG ] No samples found: qorts
[2021-11-15 21:01:56,900] multiqc [DEBUG ] No samples found: rna_seqc
[2021-11-15 21:01:56,905] multiqc [DEBUG ] No samples found: rockhopper
[2021-11-15 21:01:56,910] multiqc [DEBUG ] No samples found: rsem
[2021-11-15 21:01:56,919] multiqc [DEBUG ] No samples found: rseqc
[2021-11-15 21:01:56,923] multiqc [DEBUG ] No samples found: busco
[2021-11-15 21:01:56,928] multiqc [DEBUG ] No samples found: goleft_indexcov
[2021-11-15 21:01:56,932] multiqc [DEBUG ] No samples found: disambiguate
[2021-11-15 21:01:56,936] multiqc [DEBUG ] No samples found: supernova
[2021-11-15 21:01:56,947] multiqc [DEBUG ] No samples found: deeptools
[2021-11-15 21:01:56,951] multiqc [DEBUG ] No samples found: sargasso
[2021-11-15 21:01:56,955] multiqc [DEBUG ] No samples found: verifybamid
[2021-11-15 21:01:56,960] multiqc [DEBUG ] No samples found: mirtrace
[2021-11-15 21:01:56,964] multiqc [DEBUG ] No samples found: happy
[2021-11-15 21:01:56,968] multiqc [DEBUG ] No samples found: mirtop
[2021-11-15 21:01:56,974] multiqc [DEBUG ] No samples found: homer
[2021-11-15 21:01:56,978] multiqc [DEBUG ] No samples found: macs2
[2021-11-15 21:01:56,982] multiqc [DEBUG ] No samples found: theta2
[2021-11-15 21:01:56,986] multiqc [DEBUG ] No samples found: snpeff
[2021-11-15 21:01:56,992] multiqc [DEBUG ] No samples found: gatk
[2021-11-15 21:01:56,996] multiqc [DEBUG ] No samples found: htseq
[2021-11-15 21:01:57,001] multiqc [DEBUG ] No samples found: bcftools
[2021-11-15 21:01:57,005] multiqc [DEBUG ] No samples found: featureCounts
[2021-11-15 21:01:57,010] multiqc [DEBUG ] No samples found: fgbio
[2021-11-15 21:01:57,021] multiqc [DEBUG ] No samples found: dragen
[2021-11-15 21:01:57,025] multiqc [DEBUG ] No samples found: dedup
[2021-11-15 21:01:57,030] multiqc [DEBUG ] No samples found: damageprofiler
[2021-11-15 21:01:57,048] multiqc [DEBUG ] No samples found: biobambam2
[2021-11-15 21:01:57,052] multiqc [DEBUG ] No samples found: mtnucratio
[2021-11-15 21:01:57,054] multiqc [DEBUG ] No samples found: picard
[2021-11-15 21:01:57,059] multiqc [DEBUG ] No samples found: prokka
[2021-11-15 21:01:57,063] multiqc [DEBUG ] No samples found: samblaster
[2021-11-15 21:01:57,070] multiqc [DEBUG ] No samples found: samtools
[2021-11-15 21:01:57,075] multiqc [DEBUG ] No samples found: sexdeterrmine
[2021-11-15 21:01:57,079] multiqc [DEBUG ] No samples found: bamtools
[2021-11-15 21:01:57,083] multiqc [DEBUG ] No samples found: jellyfish
[2021-11-15 21:01:57,090] multiqc [DEBUG ] No samples found: vcftools
[2021-11-15 21:01:57,094] multiqc [DEBUG ] No samples found: longranger
[2021-11-15 21:01:57,098] multiqc [DEBUG ] No samples found: stacks
[2021-11-15 21:01:57,102] multiqc [DEBUG ] No samples found: varscan2
[2021-11-15 21:01:57,114] multiqc [DEBUG ] No samples found: bbmap
[2021-11-15 21:01:57,119] multiqc [DEBUG ] No samples found: bismark
[2021-11-15 21:01:57,123] multiqc [DEBUG ] No samples found: biscuit
[2021-11-15 21:01:57,128] multiqc [DEBUG ] No samples found: hicexplorer
[2021-11-15 21:01:57,132] multiqc [DEBUG ] No samples found: hicup
[2021-11-15 21:01:57,137] multiqc [DEBUG ] No samples found: hicpro
[2021-11-15 21:01:57,141] multiqc [DEBUG ] No samples found: salmon
[2021-11-15 21:01:57,145] multiqc [DEBUG ] No samples found: kallisto
[2021-11-15 21:01:57,150] multiqc [DEBUG ] No samples found: slamdunk
[2021-11-15 21:01:57,154] multiqc [DEBUG ] No samples found: star
[2021-11-15 21:01:57,159] multiqc [DEBUG ] No samples found: hisat2
[2021-11-15 21:01:57,163] multiqc [DEBUG ] No samples found: tophat
[2021-11-15 21:01:57,167] multiqc [DEBUG ] No samples found: bowtie2
[2021-11-15 21:01:57,171] multiqc [DEBUG ] No samples found: bowtie1
[2021-11-15 21:01:57,176] multiqc [DEBUG ] No samples found: snpsplit
[2021-11-15 21:01:57,180] multiqc [DEBUG ] No samples found: kat
[2021-11-15 21:01:57,183] multiqc [DEBUG ] No samples found: leehom
[2021-11-15 21:01:57,188] multiqc [DEBUG ] No samples found: adapterRemoval
[2021-11-15 21:01:57,192] multiqc [DEBUG ] No samples found: clipandmerge
[2021-11-15 21:01:57,196] multiqc [DEBUG ] No samples found: cutadapt
[2021-11-15 21:01:57,200] multiqc [DEBUG ] No samples found: flexbar
[2021-11-15 21:01:57,204] multiqc [DEBUG ] No samples found: kaiju
[2021-11-15 21:01:57,208] multiqc [DEBUG ] No samples found: kraken
[2021-11-15 21:01:57,213] multiqc [DEBUG ] No samples found: malt
[2021-11-15 21:01:57,217] multiqc [DEBUG ] No samples found: trimmomatic
[2021-11-15 21:01:57,221] multiqc [DEBUG ] No samples found: sickle
[2021-11-15 21:01:57,225] multiqc [DEBUG ] No samples found: skewer
[2021-11-15 21:01:57,229] multiqc [DEBUG ] No samples found: sortmerna
[2021-11-15 21:01:57,233] multiqc [DEBUG ] No samples found: biobloomtools
[2021-11-15 21:01:57,237] multiqc [DEBUG ] No samples found: fastq_screen
[2021-11-15 21:01:57,241] multiqc [DEBUG ] No samples found: afterqc
[2021-11-15 21:01:57,245] multiqc [DEBUG ] No samples found: fastp
[2021-11-15 21:01:57,315] multiqc.modules.fastqc.fastqc [INFO ] Found 8 reports
[2021-11-15 21:01:57,463] multiqc [DEBUG ] No samples found: pycoqc
[2021-11-15 21:01:57,468] multiqc [DEBUG ] No samples found: minionqc
[2021-11-15 21:01:57,472] multiqc [DEBUG ] No samples found: multivcfanalyzer
[2021-11-15 21:01:57,476] multiqc [DEBUG ] No samples found: clusterflow
[2021-11-15 21:01:57,480] multiqc [DEBUG ] No samples found: bcl2fastq
[2021-11-15 21:01:57,485] multiqc [DEBUG ] No samples found: interop
[2021-11-15 21:01:57,489] multiqc [DEBUG ] No samples found: ivar
[2021-11-15 21:01:57,494] multiqc [DEBUG ] No samples found: flash
[2021-11-15 21:01:57,498] multiqc [DEBUG ] No samples found: seqyclean
[2021-11-15 21:01:57,498] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found.
[2021-11-15 21:01:57,498] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane Statistics'.
[2021-11-15 21:01:57,498] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane 1 Demultiplexing Report'.
[2021-11-15 21:01:57,498] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'.
[2021-11-15 21:01:57,498] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'.
[2021-11-15 21:01:57,508] multiqc [INFO ] Compressing plot data
[2021-11-15 21:01:57,672] multiqc [INFO ] Report : multiqc_report.html
[2021-11-15 21:01:57,672] multiqc [INFO ] Data : multiqc_data
[2021-11-15 21:01:57,672] multiqc [DEBUG ] Moving data file from '/state/partition1/job-12034693/tmpkw3nzxa2/multiqc_data' to '/scratch/gencore/logs/html/000000000-K4JTH/1/multiqc_data'
[2021-11-15 21:02:00,234] multiqc [INFO ] MultiQC complete