Sample Filename File type Encoding Total Sequences Sequences flagged as poor quality Sequence length %GC total_deduplicated_percentage avg_sequence_length basic_statistics per_base_sequence_quality per_tile_sequence_quality per_sequence_quality_scores per_base_sequence_content per_sequence_gc_content per_base_n_content sequence_length_distribution sequence_duplication_levels overrepresented_sequences adapter_content 000000000-JR6YD_l01_n01_2354.2.ld 000000000-JR6YD_l01_n01_2354.2.ld.fastq.gz Conventional base calls Sanger / Illumina 1.9 5297502.0 0.0 76.0 38.0 68.64614741659835 76.0 pass pass warn pass warn pass pass pass warn fail pass 000000000-JR6YD_l01_n01_2355.2.ld 000000000-JR6YD_l01_n01_2355.2.ld.fastq.gz Conventional base calls Sanger / Illumina 1.9 4448524.0 0.0 76.0 38.0 72.5007664667759 76.0 pass pass warn pass warn pass pass pass pass fail pass 000000000-JR6YD_l01_n01_2367.ld 000000000-JR6YD_l01_n01_2367.ld.fastq.gz Conventional base calls Sanger / Illumina 1.9 4561120.0 0.0 76.0 40.0 55.23271840595654 76.0 pass pass warn pass fail pass pass pass warn fail pass 000000000-JR6YD_l01_n01_93.ld 000000000-JR6YD_l01_n01_93.ld.fastq.gz Conventional base calls Sanger / Illumina 1.9 5115498.0 0.0 76.0 40.0 60.98567459060187 76.0 pass pass warn pass fail pass pass pass warn warn pass 000000000-JR6YD_l01_n01_undetermined 000000000-JR6YD_l01_n01_undetermined.fastq.gz Conventional base calls Sanger / Illumina 1.9 584541.0 0.0 76.0 43.0 39.94021887094282 76.0 pass pass warn pass pass warn pass pass fail fail pass 000000000-JR6YD_l01_n02_2354.2.ld 000000000-JR6YD_l01_n02_2354.2.ld.fastq.gz Conventional base calls Sanger / Illumina 1.9 5297502.0 0.0 76.0 38.0 71.3982552657795 76.0 pass pass pass pass fail pass pass pass pass fail pass 000000000-JR6YD_l01_n02_2355.2.ld 000000000-JR6YD_l01_n02_2355.2.ld.fastq.gz Conventional base calls Sanger / Illumina 1.9 4448524.0 0.0 76.0 38.0 74.90224586981347 76.0 pass pass pass pass fail pass pass pass pass fail pass 000000000-JR6YD_l01_n02_2367.ld 000000000-JR6YD_l01_n02_2367.ld.fastq.gz Conventional base calls Sanger / Illumina 1.9 4561120.0 0.0 76.0 40.0 51.940039530650814 76.0 pass pass pass pass fail pass pass pass warn fail pass 000000000-JR6YD_l01_n02_93.ld 000000000-JR6YD_l01_n02_93.ld.fastq.gz Conventional base calls Sanger / Illumina 1.9 5115498.0 0.0 76.0 40.0 55.21877586303818 76.0 pass pass pass pass fail pass pass pass warn fail pass 000000000-JR6YD_l01_n02_undetermined 000000000-JR6YD_l01_n02_undetermined.fastq.gz Conventional base calls Sanger / Illumina 1.9 584541.0 0.0 76.0 43.0 43.477202371389595 76.0 pass pass pass pass warn warn pass pass fail warn pass