FastQCFastQC Report
Tue 3 Aug 2021
000000000-JR6YD_l01_n01_2354.2.ld.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-JR6YD_l01_n01_2354.2.ld.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5297502
Sequences flagged as poor quality0
Sequence length76
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATG1097722.07214645695273TruSeq Adapter, Index 12 (100% over 49bp)
AACTCCAGTCACAGATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTG76180.14380362669046656TruSeq Adapter, Index 12 (100% over 37bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)