Sample Filename File type Encoding Total Sequences Sequences flagged as poor quality Sequence length %GC total_deduplicated_percentage avg_sequence_length basic_statistics per_base_sequence_quality per_tile_sequence_quality per_sequence_quality_scores per_base_sequence_content per_sequence_gc_content per_base_n_content sequence_length_distribution sequence_duplication_levels overrepresented_sequences adapter_content 000000000-JJH4P_l01_n01_section1 000000000-JJH4P_l01_n01_section1.fastq.gz Conventional base calls Sanger / Illumina 1.9 4244648.0 0.0 251.0 39.0 79.42462635898922 251.0 pass pass pass pass warn warn pass pass pass pass fail 000000000-JJH4P_l01_n01_section3 000000000-JJH4P_l01_n01_section3.fastq.gz Conventional base calls Sanger / Illumina 1.9 4447485.0 0.0 251.0 39.0 79.5023733701146 251.0 pass pass pass pass fail warn pass pass pass warn fail 000000000-JJH4P_l01_n01_section4 000000000-JJH4P_l01_n01_section4.fastq.gz Conventional base calls Sanger / Illumina 1.9 4801897.0 0.0 251.0 40.0 81.37934235385539 251.0 pass warn pass pass fail pass pass pass pass pass fail 000000000-JJH4P_l01_n01_section5 000000000-JJH4P_l01_n01_section5.fastq.gz Conventional base calls Sanger / Illumina 1.9 4324022.0 0.0 251.0 40.0 82.10412982182476 251.0 pass pass pass pass fail pass pass pass pass pass fail 000000000-JJH4P_l01_n01_undetermined 000000000-JJH4P_l01_n01_undetermined.fastq.gz Conventional base calls Sanger / Illumina 1.9 579205.0 0.0 251.0 42.0 45.18383854464706 251.0 pass pass pass pass warn warn pass pass fail pass fail 000000000-JJH4P_l01_n02_section1 000000000-JJH4P_l01_n02_section1.fastq.gz Conventional base calls Sanger / Illumina 1.9 4244648.0 0.0 251.0 39.0 80.64748020638535 251.0 pass fail pass pass warn warn pass pass pass pass fail 000000000-JJH4P_l01_n02_section3 000000000-JJH4P_l01_n02_section3.fastq.gz Conventional base calls Sanger / Illumina 1.9 4447485.0 0.0 251.0 39.0 80.95182233117065 251.0 pass fail pass pass fail warn pass pass pass pass fail 000000000-JJH4P_l01_n02_section4 000000000-JJH4P_l01_n02_section4.fastq.gz Conventional base calls Sanger / Illumina 1.9 4801897.0 0.0 251.0 40.0 83.11880810186364 251.0 pass fail pass pass fail warn pass pass pass pass fail 000000000-JJH4P_l01_n02_section5 000000000-JJH4P_l01_n02_section5.fastq.gz Conventional base calls Sanger / Illumina 1.9 4324022.0 0.0 251.0 40.0 83.61809202117112 251.0 pass fail pass pass fail pass pass pass pass pass fail 000000000-JJH4P_l01_n02_undetermined 000000000-JJH4P_l01_n02_undetermined.fastq.gz Conventional base calls Sanger / Illumina 1.9 579205.0 0.0 251.0 43.0 46.53710125462047 251.0 pass warn pass pass warn fail pass pass fail warn fail