FastQCFastQC Report
Fri 29 Jan 2021
000000000-JHLT4_l01_n02_1796_d04_redo.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-JHLT4_l01_n02_1796_d04_redo.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences119241
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATAAGACGCGCCAGCGTCGCATCCGGCATTTTTTTCTGCGCCAATGCA2120.17779119598124807No Hit
GGGTATGGCTGTTCGCCATTTAAAGTGGTACGCGAGCTGGGTTTAGAACG2000.1677275433785359No Hit
GGAGCAAACGCGCCAGCGTCGCATCCGGCATTTATTCCGCACCAACGCAA1940.16269571707717984No Hit
GGTCATAGTGATCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGAT1770.14843887589000426No Hit
TCGTGAGACAGTTCGGTCCCTATCTGCCGTGGGCGCTGGAGAACTGAGGG1370.1148933672142971No Hit
GATAAAAGGTACTCCGGGGATAACAGGCTGATACCGCCCAAGAGTTCATA1330.11153881634672637No Hit
GGAGCAAACGCGCCAGCGTCGCATCCGGCATTTTTTTCTGCGCCAATGCA1200.10063652602712153No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)