FastQCFastQC Report
Thu 19 Nov 2020
000000000-JCJTB_l01_n02_undetermined.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-JCJTB_l01_n02_undetermined.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences763495
Sequences flagged as poor quality0
Sequence length251
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC15710.2057642813639906No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG2808.6669446E-526.249992245
TGGGATG3001.3849307E-424.4999926
TAGATCC4104.746693E-520.914629245
TCTCGGG3450.00891720617.753618245
TCTTCGC7552.0365258E-514.602645245
ACCACCC7600.005140344611.282891245
AAAGAGG10705.27712E-410.303736245
ATACGAC10650.0058658189.2018765
Produced by FastQC (version 0.11.5)